Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02412 ATGTCATCTGCCGGTGTCTCTACTCTTAGTGTGGTTCCCACTGAGCCATTGCTCTCACCAATGGCATTCCCTTTTCCAATTCCATCACACTTGTCTTTGGAAGATAAATCCATTTTCATATACCTCTCCTTTTCTGGCTCATTGACTCCCATCCGTGTTATGGAGTGGGATACCATTGAATCTGTCAAATTCAAAATCCAAAGGTCTGAAAGCCTTCCGTTTTTAACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAGCTTGCGCGAAGTGATTCGCTGCTCAAGGACTATGGAGTAACCGATGGAAATGTTTTGCATTTGATAATCAAACTGTCAGATCTTCAGGTCATCAGTGTGAAAACTTCTTGTGGGAAGGAATTCACGTTTCAGGTCGAACGAGGCAGGGATGTCGGGTACATAAAGCGGCGGATTGCCAGAAGGGAGAAACAGTTTGATGATCCTGAGGAGCAGGAGCTTGTGTGCAATGGGGAAAGGCTTGAGGACCAGAGGCTTATTGATGAAATATGCTGCAAACATAATGATGCAGTGGTACATCTGTTTGTGAGAAAAAAACATGTTAAAGTTCAGAGGAGGCCCCTTGAGTTGTCCATTGTAGCAAAAGATTTGATTAATAAGAAAAAAAATGATGTCAATGGAAATACTAACAGGAGAAGTTATGATGTTGGTAAAGAAGATACTATTAGGAAGTCTGATGTCATTCAAAGAGCTGTGCCGAGGAAGCCTCCCGATAGAGATTTTATTTTGGAGCCAGTTATTATTAACCCTAAAATTGAATTAGCTCCAGCTATTTGGAATATGGTGAACTCTACATATGATGGACTTGGCAGTGGCAAATATCCAATCAGATCTGCAGAGGGTACAGGAGGGGCTTACTTTATGATTGATTCAGCGGGGCAAAAGTATGTGTCTGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTCTGAATAACCCTCGAGGTCTTCCTTTGTCATTAGATGGCGAAGGCTTAAAAAAGGGTACAAGAGTTGGTCAAGGAGCATTCAGGGAAGTTGCAGCCTATGTTCTAGACCATCCATTGAGTGGGCGCCGCTCGTTATTTGGTGATGGGAAGGGCTTTGCTGGTGTTCCCCCAACATTGATGGTTAAGTGCTTGCATAAATCATTCAACTATCCCAGAGAATTTACTCCTAAGATTGGCTCCTTGCAAATGTTCACAGAAAATAGTGGAAGTTGTGAAGATATGGGCCCGGGGGCTTTCCCAGTAAAGGAGGTACATAAAATTACTGTTTTGGACATAAGACTGGCTAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCAAAGAGGAGGACAACAACCAGTCTGTTCTGATTCCAATTGATCATGGATACTGCCTGCCCACAAGCTTTGAAGATTGTACCTTTGAGTGGCTTTACTGGCCTCAAGCTCGCCAGCCATACTCCCCAGAAACTATTGACTACATAAAGTCACTGGATGCTGAAGAAGATATTGCCCTTTTAAAGTTTCATGGATGGGATCTGCCAGTTGAATGTGCCCGCACTCTTAGGATCTCAACCATGCTTTTGAAGAAAGGGGTAGAGAGAGGATTGACCCCTTTTGCCATTGGAAACCTGATGTGCAGAGAATCCTTGAACAAGGAATCTGTGATTGAAGAAATAGTACAAGCAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATGCTGTTTCCCAAATCATGGACTTGCGCCTCGATGAGATTGTCAGAGCTCGTTTATAA 1800 0.4328 MSSAGVSTLSVVPTEPLLSPMAFPFPIPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIESVKFKIQRSESLPFLTNKQKLVYAGRELARSDSLLKDYGVTDGNVLHLIIKLSDLQVISVKTSCGKEFTFQVERGRDVGYIKRRIARREKQFDDPEEQELVCNGERLEDQRLIDEICCKHNDAVVHLFVRKKHVKVQRRPLELSIVAKDLINKKKNDVNGNTNRRSYDVGKEDTIRKSDVIQRAVPRKPPDRDFILEPVIINPKIELAPAIWNMVNSTYDGLGSGKYPIRSAEGTGGAYFMIDSAGQKYVSVFKPIDEEPMALNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYVLDHPLSGRRSLFGDGKGFAGVPPTLMVKCLHKSFNYPREFTPKIGSLQMFTENSGSCEDMGPGAFPVKEVHKITVLDIRLANADRHAGNILISKEEDNNQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPETIDYIKSLDAEEDIALLKFHGWDLPVECARTLRISTMLLKKGVERGLTPFAIGNLMCRESLNKESVIEEIVQAALDSVLPGTSEATLLDAVSQIMDLRLDEIVRARL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02412 599 Gene3D - 37 111 - -
Gma19g02412 599 ProSiteProfiles Ubiquitin domain profile. 118 175 IPR000626 GO:0005515
Gma19g02412 599 ProSiteProfiles Ubiquitin domain profile. 36 111 IPR000626 GO:0005515
Gma19g02412 599 SUPERFAMILY Ubiquitin-like 109 192 IPR029071 -
Gma19g02412 599 SUPERFAMILY Protein kinase-like (PK-like) 431 594 IPR011009 -
Gma19g02412 599 SUPERFAMILY Ubiquitin-like 37 112 IPR029071 -
Gma19g02412 599 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 595 IPR044571 -
Gma19g02412 599 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 285 578 IPR000403 -
Gma19g02412 599 SMART ubq_7 116 190 IPR000626 GO:0005515
Gma19g02412 599 SMART ubq_7 38 111 IPR000626 GO:0005515
Gma19g02412 599 CDD Ubl_ubiquitin_like 118 188 - -
Gma19g02412 599 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 595 - -
Gma19g02412 599 Pfam Ubiquitin family 118 191 IPR000626 GO:0005515
Gma19g02412 599 Pfam Ubiquitin family 40 112 IPR000626 GO:0005515
Gma19g02412 599 Pfam Phosphatidylinositol 3- and 4-kinase 294 543 IPR000403 -
Gma19g02412 599 Gene3D - 116 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02412 Gma-Chr19 52623381 52626113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02412 35 593 Acyl Lipid Metabolism Gene Families AT5G24240 55.830 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02412 - - gmx:100791631 1199.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02412 19 52623381 52626113 Gma19g02412 19 52623381 52626113 ECH
Gma19g02412 19 52623381 52626113 Gma16g00217 16 2355877 2359468 ECH
Gma01g02264 01 57799813 57802839 Gma19g02412 19 52623381 52626113 ECH
Gma05g02119 05 42399490 42401751 Gma19g02412 19 52623381 52626113 ECH
Gma08g00225 08 1915950 1918371 Gma19g02412 19 52623381 52626113 ECH
Gma19g02412 19 52623381 52626113 Gma03g02368 03 48816258 48818197 GST
Gma19g02412 19 52623381 52626113 Gma07g00518 07 4971510 4974782 PCT
Gma19g02412 19 52623381 52626113 Gma16g00217 16 2355877 2359468 PCT
Gma07g00518 07 4971510 4974782 Gma19g02412 19 52623381 52626113 PCT
Gma16g00217 16 2355877 2359468 Gma19g02412 19 52623381 52626113 PCT