Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00217 ATGTCGTCTGCTGGTGTCACCACTCTTAGCCCTGTTCCAAGGGAACTATTGTTGTCCCCAGATGGATACTATACCCCATTGCACTTGTCATTGGATCAAGAGTTTATTTTCATATATCTGTCCTATTATGGATCTTTGACTCCAATGCGGGTTCTTCCCTGCGATACCATCGAGTCTGTGAAACTCAAAATCCAGAAGTCTGAGGGGCTTCCTTCATTGACAAACAAACAAAAGTTGGTTTGCGATGGGCGGGAGCTAGCGCGGAGCAATTCCCTGCTGAAAGAATATGGGGTTACGGAAGGAAATGTTTTGCATTTGGTTATTAGGCTGTCGGATCTCCAGACCATCAGTGTGAGAACTTCTTCCGGGAAGGACTTCACTTTTCAGGTGGAGAGATGCAGAGATGTCGGGTATGTTAAGCAACAGATTGCGAAGAAGGAGAAGCGCTTTGCTGATCCTGAACAGCAGGAAGTTGTGTGTAACGGGGAGCTGCTTGAGGATCAGACGCTTATTGATGGTATCTGCAGTAAATATAACGATGCAGTGATTCATCTTTTTGTTAGGGTGAAATATGCAGAAGTTAGGACGGGACAAGATGAGTTGTCCGTTGTGGCAAAGGAGTTGAAAGATACAAAAGATTATGATGTTAGTGAAACTAATTGTAGGAAAAAATATGATGTTAGTAAAGAAGATACAGGAAGGGAGTATGGAGTCGTTGAGCCAATTGTGCCGAGGAAGGCTATTGATAGGGATCTTCTTTTGGAGCCGGTTATTGTTAACAAAAAAATTGAATTAGCTTCTGAGGTTTGGAATATGATAAACTCTACATATGAAGGGCTAGACAGTGGAAATTATCCAATCAGATCTGCAGAGGGTACAGGGGGTGCTTACTTTATGCTTGATTCAACCGGGCAAAAGTACATATCTGTTTTTAAGCCCATTGATGAAGAGCCAATGGCTGTGAATAACCCTAGAGGTTTACCTTTCTCTGAAGATGGTGAAGGCTTAAAGAAGGGTACAACAGTTGGTCAGGGAGCATTCAGGGAAGTTGCAGCTTATATTTTGGATCATCCAATGAGTGGCCGCCGATCATTATTTGGTGATGAGAAGGGATTTGCTGGGGTTCCCCCGACTGTTATGGTTAAGTGCTTGCATAAAGGATTTAACCATCCTGGAGACTTGACTGCTAAGATTGGCTCCTTGCAAATGTTCATGGAGAATAATGGAAGCTGCGAGGATATCGGACCTGGGGCTTTCCCAGTGAAGGAAGTGCATAAAATTTCAGTACTGGACATGCGACTCGCAAACGCAGATAGACATGCTGGGAATATTTTGATTGGCAAAGAGAAGGAAAATGACCAGGCTGTTTTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAGGATTGTACCTTTGAATGGCTTTATTGGCCTCAAGCTCGCCAGCCATACTCTCCAGAGATCATTGACTATATAAAGTCACTGGATGCTGATGAAGATATTGCCCTTTTGAAGTTTCATGGATGGAATCTTCCAGTTGAATGCGCCCGCACTCTTCAAATCTCAACCATGCTTCTGAAGAAAGGAGTGGAGAGGGGGATGACCCCCTTTGCCATTGGAAGTCTTATGTGCAGGGAATCCTTGAACAAGGAGTCTGTGATTGAGGGAATTGTAAAGGCAGCTCTGGATTCTGTTCTTCCTGGCACAAGTGAAGCCACGTTTCTGGATGCTGTTTCTGAAATCATGGACCAGCACCTTGATTAG 1773 0.4394 MSSAGVTTLSPVPRELLLSPDGYYTPLHLSLDQEFIFIYLSYYGSLTPMRVLPCDTIESVKLKIQKSEGLPSLTNKQKLVCDGRELARSNSLLKEYGVTEGNVLHLVIRLSDLQTISVRTSSGKDFTFQVERCRDVGYVKQQIAKKEKRFADPEQQEVVCNGELLEDQTLIDGICSKYNDAVIHLFVRVKYAEVRTGQDELSVVAKELKDTKDYDVSETNCRKKYDVSKEDTGREYGVVEPIVPRKAIDRDLLLEPVIVNKKIELASEVWNMINSTYEGLDSGNYPIRSAEGTGGAYFMLDSTGQKYISVFKPIDEEPMAVNNPRGLPFSEDGEGLKKGTTVGQGAFREVAAYILDHPMSGRRSLFGDEKGFAGVPPTVMVKCLHKGFNHPGDLTAKIGSLQMFMENNGSCEDIGPGAFPVKEVHKISVLDMRLANADRHAGNILIGKEKENDQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIKSLDADEDIALLKFHGWNLPVECARTLQISTMLLKKGVERGMTPFAIGSLMCRESLNKESVIEGIVKAALDSVLPGTSEATFLDAVSEIMDQHLD 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00217 590 CDD Ubl_ubiquitin_like 116 186 - -
Gma16g00217 590 SMART ubq_7 114 188 IPR000626 GO:0005515
Gma16g00217 590 SMART ubq_7 36 109 IPR000626 GO:0005515
Gma16g00217 590 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 283 576 IPR000403 -
Gma16g00217 590 Gene3D - 37 111 - -
Gma16g00217 590 Pfam Ubiquitin family 45 110 IPR000626 GO:0005515
Gma16g00217 590 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Gma16g00217 590 Gene3D - 112 196 - -
Gma16g00217 590 SUPERFAMILY Ubiquitin-like 29 110 IPR029071 -
Gma16g00217 590 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 590 IPR044571 -
Gma16g00217 590 Pfam Phosphatidylinositol 3- and 4-kinase 292 541 IPR000403 -
Gma16g00217 590 ProSiteProfiles Ubiquitin domain profile. 55 109 IPR000626 GO:0005515
Gma16g00217 590 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 590 - -
Gma16g00217 590 SUPERFAMILY Ubiquitin-like 109 189 IPR029071 -
Gma16g00217 590 ProSiteProfiles Ubiquitin domain profile. 114 172 IPR000626 GO:0005515
Gma16g00217 590 SUPERFAMILY Protein kinase-like (PK-like) 428 589 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00217 Gma-Chr16 2355877 2359468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00217 1 590 Acyl Lipid Metabolism Gene Families AT5G24240 54.790 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00217 - - gmx:100815111 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00217 16 2355877 2359468 Gma16g00217 16 2355877 2359468 ECH
Gma19g02412 19 52623381 52626113 Gma16g00217 16 2355877 2359468 ECH
Gma01g02264 01 57799813 57802839 Gma16g00217 16 2355877 2359468 ECH
Gma05g02119 05 42399490 42401751 Gma16g00217 16 2355877 2359468 ECH
Gma08g00225 08 1915950 1918371 Gma16g00217 16 2355877 2359468 ECH
Gma07g00518 07 4971510 4974782 Gma16g00217 16 2355877 2359468 GST
Gma19g02412 19 52623381 52626113 Gma16g00217 16 2355877 2359468 PCT
Gma03g02368 03 48816258 48818197 Gma16g00217 16 2355877 2359468 PCT
Gma16g00217 16 2355877 2359468 Gma19g02412 19 52623381 52626113 PCT
Gma16g00217 16 2355877 2359468 Gma03g02368 03 48816258 48818197 PCT