Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00586 ATGCCGACGCCGGTTAGCACCGCGAGGCAATGCCTGACGGATGAGGCGGCGCGTGCTCTCGACGACGCCGTCTCCGTCGCCCGCCGCCGCAGTCACGCCCAGACCACCTCCCTCCACGCCGTCTCCGCCCTCCTCTCCCTCCCCTCTGCCTCCCTCCGCGACGCCTGCTCCCGCTGCCGCAGCTGCTCCTACTCCCCCCGCCTCCAGCTCCGCGCCCTGGAACTCTCCGTCGGCGTCTCCCTGGACCGCCTCCCCACCACCAAATCCTCCGGCGGCGGCGGCGGTGGCGAAGAAGGCCCTCCCGTCTCAAACTCCCTCATGGCCGCCATCAAGCGCTCCCAAGCCAACCAGCGGCGGCACCCCGACAGCTTCCACCTGATGCAGATGATGCAGCAGCAACAGCAAACGACGTCGTTGCTCAAAGTCGAACTCAAACACTTCATTCTCTCTATCCTCGACGACCCTATAGTGAGTCGCGTCTTCGCCGAAGCCGGTTTCCGAAGCTACGACATCAAGCTCGCCCTCCTCCAACCCCCTCCCCCACCCTCCAGAATCTTCTCTCGCCTAACCCCACCGGTTTTCCTCTGCAACCTCGAACCGGTTCAAACCGGTTCCTTCCAACCCGGTTCGCGCCTTGACGAGAATTGCCGCAGAATCGTCGAGGTAGTCGCGAGAAAAACAAAAAGGAACCCTCTTTTGATGGGGGTTTATGCCAAAACCTCTCTCAGGAGCTTCGTTGAAGTTGTGAAGAATGGTAAAGGTGGAGTCTTGCCTTGTGAACTAAACGGTTTGAGCGTGGTTTCGGTGGAAAAGGAGATTGGGGAGTTTCTTAGGGAAGGTGGGAGGGGTGAGAAGATTTTTGAGCATGTGAGTCGTTTGGTGGAGCAGTGTGGTGCTGGGGTTGTGGTGTGTTTCGGGGAAATTGAGGTTTTTGTTGGGGGGAATAATGAAGAGGGTGATGTTGGGTTTGTGGTTTCGCAACTGACGAGGTTGTTGGGGATTCATGGAGGGAAGGTGTGGTTGTTGGGGGTGGCGGGAACATCTGAGGCCTATTCTAAGTTCCTGAGGTTGTTTCCTACTGTGGACAAGGATTGGGATCTGCATCTTCTGACCATGACCTCTGCCACCCCTTCCATGGAAGGACTCTACCCTAAGTCCAGCTTGATGGGGTCCTTTGTGCCATTTGGTGGGTTCTTTTCTACACCTTCTGAGTTCAAGAGTCCCCTAAGCTGTACGAATGCTTCATCTTTAAGTCGGTGTGACTCATGCAATGAAAAGTGTGAGCAAGAAGTTGCTGATATTTTGAAGGTAGGCCCTGCTACTTCGGCATCTGGTTACTCCTCCACGAGCTTGCCTTGGTTACAAAAGGTTAATGTGGACTCAGATAGAAGATTGGATGTGGCAAAGACTAATGAAGAAAATACAAGTTTGAATAAGAAGATCTTCGGATTGCAAAGGAAATGGAGTGATATTTGTCAACGTCTTCATCAAAATCGATCATTACCTGAATTTGATATTACCAAAGCAAGGTTCCAAGCTACTTCCCACGAGGGGTTTCAATTTGGTCCAGGAAGTAGCAGCAAAGGTCCACTCCATAGTGAAATCCAATATCCTAATCAAATTTCCTACATGTCTAAAGTGTCACAGAGTGCATTTCCATTTAAACAGATATTACCAGTTTCAGTACCTTTTGACACTGTTAGTATCACTGATGAAGCAGACCACATACCAAAAGTTTCAAAGAGTCATATGCATGGTACTTGGATTTCTCCTTCCCCTAAGGCCAATATGAGCCTTCTTGATCCCACAACATCTTCTTCCCTGACTCCTGTGACCACAGATTTGGGATTGGGAACAATATACACATCAGCTGCTCATGAGCCAGACACACCAAAACTAAGTGATCATAAGAAGCCTCTTCATCACTTGTCAGACTCCCTTTCAACCGATTTTGATGCTATGAATGAGAGTACTTCACACCAAATCGCTAGATCTTCTTCCTGTTCTGGTCCAAATCTAGAAGGGAGATTTGAAACTGTAGATTTCAAGTCATTTTACCATCTTCTCACTGAAAAGGTTGGCTGGCAGGATGAGGCCATATATGCTATCAATCGAACTGTGTCCCGTTGTAGATCCTGCGCTGGAAAGCGTAGTAGTGGCTCACATGTTAGAGCAGACATATGGCTTGCATTTCTCGGACCAGATAGACTTGGAAAAAGAAAAGTTGCATCAGCACTTGCTGAGATTTTATTTGGAAACAAACAAAGCCTAATCACTGTGGATTTGAGCTCCCAAGACAGGTCTTATCCAACAAACTCGATTTTTGAATTCCAAAATACATATTGTCATGATGTGCTTATGAGGAAGACAGTGTTGGACTATGTTGCTGGGGAGTTAAGTAAAAAGCCACATTCAGTTGTCTTTCTTGAAAATGTAGATCAAGCTGATTTCCTGGTGCAGAATAGTTTGTTCCAAGCAATAAAAACAGGTAAATTCCCATACTCACATGGAAGGGAAATCAGCATCAACAATGCAATGTTCATTGTAACCTCTAGTGTGTTTAAAGGTAGTGGCTCTTTTAGTTTGGAGGGGGATCCTAAAATGTTTCCAGAGGAAAGAATCCTAGAAGCTAAAAGATGTCAAATGCAATTATCACTTGGACATGCTTCTGAGGATGCCAAAAGGAGCGGTTGCACAAATGTGAAGGTTGCACAGAGAAAAGGGACCTCCAAAACAACATTTCTGAATAAAAGAAAGCTAATAGAAAGTGGTGATTCCAAAGAGAAAGCATCATGCAAAACATTGAAACAGGTCGGGGAGGCATCGAGGTCCTATCTGGATCTGAACATGCCTCTTGAGGAGGTTGAAGAGGGCAACAATTACAATGATTATGAAAGTGACGCCTGGTTAAATGATTTGTGTGATCAAGTTGATGAAAAAGTTGTTTTTAAGCCATTCAACTTTGATTCTATTGCTGAGAAAGTAATAAAAAGCATTGACACGCAATTTCAAAAGATGTTAGGATCAGAGTTTATACTTGAAATTGAGTATGAGGTCATGACACAGATACTTGCAGCTGCTTGGTTATCAGACAAGAAAAAAGCAGTGGAGGATTGGGTTGAACATGTTCTTGGCAGAAGCTTAGCTGAAGCTCATCAGAAGTACCGCTTTGTACCTGAATTTGTGATGAAACTGGTTAACTGTGAAAGAATTTTTTTGGAAGAACAATCTCCTGGAGTATGCCTTCCAGCTAGAATTAACTTGAACTGA 3270 0.467 MPTPVSTARQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPSASLRDACSRCRSCSYSPRLQLRALELSVGVSLDRLPTTKSSGGGGGGEEGPPVSNSLMAAIKRSQANQRRHPDSFHLMQMMQQQQQTTSLLKVELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLQPPPPPSRIFSRLTPPVFLCNLEPVQTGSFQPGSRLDENCRRIVEVVARKTKRNPLLMGVYAKTSLRSFVEVVKNGKGGVLPCELNGLSVVSVEKEIGEFLREGGRGEKIFEHVSRLVEQCGAGVVVCFGEIEVFVGGNNEEGDVGFVVSQLTRLLGIHGGKVWLLGVAGTSEAYSKFLRLFPTVDKDWDLHLLTMTSATPSMEGLYPKSSLMGSFVPFGGFFSTPSEFKSPLSCTNASSLSRCDSCNEKCEQEVADILKVGPATSASGYSSTSLPWLQKVNVDSDRRLDVAKTNEENTSLNKKIFGLQRKWSDICQRLHQNRSLPEFDITKARFQATSHEGFQFGPGSSSKGPLHSEIQYPNQISYMSKVSQSAFPFKQILPVSVPFDTVSITDEADHIPKVSKSHMHGTWISPSPKANMSLLDPTTSSSLTPVTTDLGLGTIYTSAAHEPDTPKLSDHKKPLHHLSDSLSTDFDAMNESTSHQIARSSSCSGPNLEGRFETVDFKSFYHLLTEKVGWQDEAIYAINRTVSRCRSCAGKRSSGSHVRADIWLAFLGPDRLGKRKVASALAEILFGNKQSLITVDLSSQDRSYPTNSIFEFQNTYCHDVLMRKTVLDYVAGELSKKPHSVVFLENVDQADFLVQNSLFQAIKTGKFPYSHGREISINNAMFIVTSSVFKGSGSFSLEGDPKMFPEERILEAKRCQMQLSLGHASEDAKRSGCTNVKVAQRKGTSKTTFLNKRKLIESGDSKEKASCKTLKQVGEASRSYLDLNMPLEEVEEGNNYNDYESDAWLNDLCDQVDEKVVFKPFNFDSIAEKVIKSIDTQFQKMLGSEFILEIEYEVMTQILAAAWLSDKKKAVEDWVEHVLGRSLAEAHQKYRFVPEFVMKLVNCERIFLEEQSPGVCLPARINLN 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00586 1089 ProSiteProfiles Clp repeat (R) domain profile. 8 181 IPR004176 -
Gma18g00586 1089 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1089 - -
Gma18g00586 1089 Gene3D - 10 177 IPR036628 -
Gma18g00586 1089 SUPERFAMILY Double Clp-N motif 12 124 IPR036628 -
Gma18g00586 1089 Gene3D - 660 894 IPR027417 -
Gma18g00586 1089 Gene3D - 198 365 IPR027417 -
Gma18g00586 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 853 IPR027417 -
Gma18g00586 1089 Pfam AAA domain (Cdc48 subfamily) 729 853 IPR003959 GO:0005524|GO:0016887
Gma18g00586 1089 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1089 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00586 Gma-Chr18 5747518 5753846 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00586 - - gmx:100776148 2101.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00586 18 5747518 5753846 Gma18g00586 18 5747518 5753846 ECH
Gma18g00586 18 5747518 5753846 Gma18g00246 18 2010302 2015492 ECH
Gma18g00586 18 5747518 5753846 Gma11g02331 11 38700191 38704926 ECH
Gma10g00729 10 8997349 9001602 Gma18g00586 18 5747518 5753846 ECH
Gma02g01876 02 43529634 43533685 Gma18g00586 18 5747518 5753846 ECH
Gma18g00586 18 5747518 5753846 Gma11g01945 11 24996611 25002502 GST
Gma18g00586 18 5747518 5753846 Gma14g01925 14 49960520 49965881 PCT
Gma18g00586 18 5747518 5753846 Gma02g02148 02 47278430 47284140 PCT
Gma14g01925 14 49960520 49965881 Gma18g00586 18 5747518 5753846 PCT
Gma02g02148 02 47278430 47284140 Gma18g00586 18 5747518 5753846 PCT