Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01945 ATGCCGACGCCGGTAAGCACCGCGAGGCAATGCCTGACGGACGAGGCGGCGCGTACCCTCGACGACGCCGTCTCCGTCGCCCGGCGCCGCAGCCACGCCCAAACCACCTCCCTTCACGCCGTCTCCGCCCTCCTCTCCCTCCCCTCCGCCTCACTCCGCGACGCCTGCTCCAGCTGCCGCAGCTGCTCCTACTCCCCCCGCCTCCAGTTTCGCGCCCTCGAACTCTCCGTCGGCGTCTCCCTCGACCGCCTCCCCACCACCAAATCCGGCGGCGCCGATGAGGGTCCTCCCGTCTCAAACTCCCTGATGGCTGCCATCAAGCGCTCCCAGGCCAACCAGCGTCGCCACCCGGACAGCTTCCACCTTATGCAAATGATGCAGCATCAAACTCAAACGACGTCGTTGCTCAAAGTCGAACTCAAACACTTCATTCTCTCTATCCTCGACGACCCTATCGTGAGTCGCGTCTTCGCCGAAGCCGGTTTCCGAAGCTACGACATCAAACTCGCCCTCCTCCACCCCCCTCCTCCCCCTCCCTCCAGAATCTTCTCTCGCCTCACCCCACCGCTTTTCCTCTGCAACCTTGAACCTATCCAAACCGGTTCAGTCCAACCCATTTCGTGCCTCGACGATAATTGCCGCAGAATCGTCGAAGTAATCACCAGGAAGACCAAAAGGAACCCTCTTTTGATGGGGGTGTACGCCAAAACCGCTCTCAGGAGCTTCGTTGAAGTTGTGAAGAAGAACGGTAAAGGTGGAGTCTTGCCTTGTGAGCTTAACGGTTTGAGCGTGGTTTCGGTGGAAAAAGAGATTGGGGAGTTTCTGAGGGAAGGTGGGAGGGGTGAGATGATTTTTGAGCATGTGGGTCATTTGGTGGAGCATGGTGGTGGTGGGGTTGTGGTGTGTTACGGGGAGATTGAGGTTTTTGTTGGGGGGTATAAGgaagaaggtagtgttgggtttgtggtttcgcagttgacgaggttgttgggggttcatggaggagggaaggtgtggttgttgggggtggcgggaacctctgaggactattctaagttcctgaggttgtttcctactgtggacaaggattgggatctgcatcttctgaccatgacctctgccaccccttccattgaaaaactctaccctaagtccagCTTGATGGGGTCCTTTGTGCCATTTGGTGGGTTCTTTTCTACACCTTCTGAGTTCAAAAATCCCGTAAGCTGTACGAATGCATCATCATCATCTTTACTAACTCGATGTGACACATGCAATGAAAGTTGTGAGCAAGAAGTTGCTGATATTTTGAAGGTAGGCCCTGCTGCTACTTCAACTTCTGTTTACTCCTCCACGAGCTTGCCTAGGTTACAAAAGGTTAATGTGGACTCAGATAGAGGATTGGATGTGGCAAAGACTAATGAAGAAAATACAAGTTTGAATATAAAGATCTTCGGATTGCAAAGGAAATGGAGTGATATTTGTCAACGTCTTCATCAAAACCGATCATTACCTGAATTTGATATCACCAAAACAAGGTTCCAAGCTCCTTCCCATGAGGGGTTTCAATTTGGTCCAGGAAGTAGCAGCAGAGGTCCACTCCATAGTGAAATCCAATATTCTGATCATATTTCCTACATGTCTAAAGAGTCACAAAGTGCATTTCCATTTAAACAGATATTACCAGTTTCGGTACCTTTTGACACTGTTAGTATCACTGATGAAGCAGACCAAATACCAAAAGTTTCAAAGACTGATATGCATGGTACTTGGGTTTCTCCTTCCCCTAAGGCCAATATAAGCCTTCTTGATCCCACAACATTTTCATCTGTGACTCCTGTGACCACAGATTTGGGATTGGGAACAATTTACACATCAGCTGCTCATGAGCCAGACACACCAAAACTAAGTGATCATAAGAAGCCTCTCCATCACTTGTCAGATTCCCTTTCAACCGATTTTGATGCTATGAATGAGAATACTTCACACCAAATTGCAAGATCTTCTTCCTGCTCTGGTCCAAATCTAGAAGGGAGATTTGAAACTGTAGATTTCAAGTCACTTTACCATCTTCTCACTGAAAAGGTTGGCTGGCAGGATGAGGCCATATACGCTATCAATCGAACCGTGTCTCGTTGTAGATCCGGTGCTGGAAAGCTTAGTAGTGGTTCACATGTTAGAGCAGACATATGGCTTGCTTTTCTTGGACCAGATAGGCTTGGAAAAAGAAAAATTGCATCAGCACTTGCTGAGATTTTATTTGGAAACAAACAAAGCCTAATCACTGTGGATTTGAGCTCCCAAGACCGGTGTTACCCATCATACTCTATTTTTGAATTCCAAAATTCATATTGTCATGATGTGCTTATGAGGAAGACAGTGTTGGACTATATTGCTGGGGAGTTGAGTAAAAAGCCGCACTCGGTCGTCTTTCTTGAAAATGTGGATCAAGCTGATTTCCTGGTGCAGAATAGTTTGTTCCATGCAATAAAAACAGGTAAATTCCCATACTCACACGGAAGGGAAATCAGCATCAACAATGCAATGTTTATTGTAACCTCTAGTGTGTTTAAAAGTAGTGGCTCTTTTAACTTGGAGGAGGATCCTAAAATGTTTCCAGAGGAAAGAATCCTAGAAGCTAAAAGATGTCAAATGCAATTATCACTTGGACATGCTTCTGAGGGTGCCAAAAGGAGTGGTTGCACAAATGTGAAGGTTGCAGAGAGAAAAGGGAAATCCAAAACAACATTTCTGAGTAAAAGAAAGCTAATAGAAAGTGGTGATTTAAAAGATAAAGCACCATGCAAGACACTGAAACCAGTCAGGGAGGCATCGAGGTCCTATCTCGATCTTAATATGCCTCTTGAGGAGGTTGAAGAGGGCAACAATTACAATGATGATGAAAGTGAATCAATAGTTGAAAACTCTGGAGCCTGGTTAAATGATTTGTGTGATCAAGTTGATGAAAAAGTTGTTTTTAAGCCTTTCAACTTTGATTCTATTGCTGAGCAAGTAATTAAAAGCATTGACACACAATTTCAAAAGATGTTAGGATCAGAGTTTATACTTGAAATTGAGTATGAGGTCATGACACAGATACTTGCAGCTGCTTGGTTATCAGACAAGAAAAAATCTTTGGAAGATTGGGTTGAACATGTTCTTGGAAGAAGCTTTGGTGAAGCTCATCAAAAGTACCACTTTGCACCTGAATTTGTGATGAAACTGGTTAATTGTGAAAGATTTTTTTTGGAAGAACAATCTCCTGGAGTATGCCTTCCAGCTAGAATTAACTTGAACTGA 3300 0.4248 MPTPVSTARQCLTDEAARTLDDAVSVARRRSHAQTTSLHAVSALLSLPSASLRDACSSCRSCSYSPRLQFRALELSVGVSLDRLPTTKSGGADEGPPVSNSLMAAIKRSQANQRRHPDSFHLMQMMQHQTQTTSLLKVELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLHPPPPPPSRIFSRLTPPLFLCNLEPIQTGSVQPISCLDDNCRRIVEVITRKTKRNPLLMGVYAKTALRSFVEVVKKNGKGGVLPCELNGLSVVSVEKEIGEFLREGGRGEMIFEHVGHLVEHGGGGVVVCYGEIEVFVGGYKEEGSVGFVVSQLTRLLGVHGGGKVWLLGVAGTSEDYSKFLRLFPTVDKDWDLHLLTMTSATPSIEKLYPKSSLMGSFVPFGGFFSTPSEFKNPVSCTNASSSSLLTRCDTCNESCEQEVADILKVGPAATSTSVYSSTSLPRLQKVNVDSDRGLDVAKTNEENTSLNIKIFGLQRKWSDICQRLHQNRSLPEFDITKTRFQAPSHEGFQFGPGSSSRGPLHSEIQYSDHISYMSKESQSAFPFKQILPVSVPFDTVSITDEADQIPKVSKTDMHGTWVSPSPKANISLLDPTTFSSVTPVTTDLGLGTIYTSAAHEPDTPKLSDHKKPLHHLSDSLSTDFDAMNENTSHQIARSSSCSGPNLEGRFETVDFKSLYHLLTEKVGWQDEAIYAINRTVSRCRSGAGKLSSGSHVRADIWLAFLGPDRLGKRKIASALAEILFGNKQSLITVDLSSQDRCYPSYSIFEFQNSYCHDVLMRKTVLDYIAGELSKKPHSVVFLENVDQADFLVQNSLFHAIKTGKFPYSHGREISINNAMFIVTSSVFKSSGSFNLEEDPKMFPEERILEAKRCQMQLSLGHASEGAKRSGCTNVKVAERKGKSKTTFLSKRKLIESGDLKDKAPCKTLKPVREASRSYLDLNMPLEEVEEGNNYNDDESESIVENSGAWLNDLCDQVDEKVVFKPFNFDSIAEQVIKSIDTQFQKMLGSEFILEIEYEVMTQILAAAWLSDKKKSLEDWVEHVLGRSFGEAHQKYHFAPEFVMKLVNCERFFLEEQSPGVCLPARINLN 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01945 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 680 856 IPR027417 -
Gma11g01945 1099 SUPERFAMILY Double Clp-N motif 12 120 IPR036628 -
Gma11g01945 1099 Gene3D - 10 173 IPR036628 -
Gma11g01945 1099 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1099 - -
Gma11g01945 1099 Gene3D - 662 894 IPR027417 -
Gma11g01945 1099 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1099 - -
Gma11g01945 1099 ProSiteProfiles Clp repeat (R) domain profile. 8 177 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01945 Gma-Chr11 24996611 25002502 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01945 - - gmx:100805591 2090.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01945 11 24996611 25002502 Gma11g01945 11 24996611 25002502 ECH
Gma11g01945 11 24996611 25002502 Gma18g00246 18 2010302 2015492 ECH
Gma11g01945 11 24996611 25002502 Gma11g02331 11 38700191 38704926 ECH
Gma10g00729 10 8997349 9001602 Gma11g01945 11 24996611 25002502 ECH
Gma02g01876 02 43529634 43533685 Gma11g01945 11 24996611 25002502 ECH
Gma18g00586 18 5747518 5753846 Gma11g01945 11 24996611 25002502 GST
Gma11g01945 11 24996611 25002502 Gma14g01925 14 49960520 49965881 PCT
Gma11g01945 11 24996611 25002502 Gma02g02148 02 47278430 47284140 PCT
Gma14g01925 14 49960520 49965881 Gma11g01945 11 24996611 25002502 PCT
Gma02g02148 02 47278430 47284140 Gma11g01945 11 24996611 25002502 PCT