Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02148 ATGCCGACGCCGGTCAGCATAGCGAGGCAATGCTTAACCGACGAGGCCGCGCGTGCACTCGACGACGCGGTCGCCGTCGCGCGCCGCCGCAGCCACGCACAGACGACGTCGCTCCACGCCATCTCCGCCCTTTTAGCGCTCCCCTCCTCCGCCCTGCGCGACGCGTGCGGCCGCGCGCGCTCCGGCGCCGCCAGATTCTCCGCCACGTACTCGCCGCGCCTCCAGTTCCGCGCGCTGGAACTCTCCGTCGGAGTCTCCCTCGACCGGCTCCCGTCGTCGAAGTCCACCGCCGGCGGCAGCGACGAGGAGCCGCCGGTGTCGAACTCTCTGATGGCGGCGATAAAGCGGTCTCAGGCGAACCAGCGGCGGCACCCGGAGAGCTTCCACATGTTCCAGCAGAGCCAGCAGGGAACGACAACGACGTCGTTTTTGAAAGTTGAACTAAAGCACTTCGTTTTGTCGATCCTCGATGACCCTATCGTGAGTCGCGTTTTCGCCGAAGCAGGGTTTCGAAGCTGCGATATAAAACTCGCGTTGCTCCAACCGCCTCTACCTCCGGTTCAGCACCGGTTCAACCGGTCGCCTCCGGTTTTTCTCTGTAACCTCGACCCGGCCCGGCCTGACGAAAATATTCGCAGGATCTTGGAAGTTCTCGCGAGAAAAAACAAGAGAAACCCTTTACTTATGGGTGTTTACGCAAAGAATGCTCTGAGGGGTTTCGTTGAGATGGTTCGGAACGGAAGAGGAGGTTCGGTGTTAGGTTCGGAGTTGAGGGTTGTCTGTTTGGAGAGGGAGATTGGGGAGTTTGTGAAAAAGGGTGGTAGTGGGGAAGAGAAATTTGGTGTGAGGTTGAAGGAGTTGGAACAATGTGAGAGTTCTGGTTCTGGGGTTGTTGTTAGTTTCGGGGAGATTGAGGTTTTTTTAGGGGATGATGTGGATGTTGATGCTGTTAGGTTCGTTTTTTCGGGTTTAACGAGGTTGTTGGAGATTCGTGGTGAGAAGGTTTCGTTGCTGGGGGTGGCGGAAACTTCTCATGCTTATTCGAAGTTGTTGGGTTTGTTTCCTAATGTGGAGAACGATTGGGATCTTCATTTGCTTACTGTTACTTCCGCCACTCCTTCAATGGAAGGACTCTACTCTAAATCCAGCTTGATGGGGTCCTTTGTTCCATTTGGTGGGTTCTTTTCTACACCTGAAATCAGAAGTCCCGTAAGCTGTACAAATGCACCTTTTACCCGTTGTGACACATGCAATAAAAAATGTGAACAAGAAGTTGCAGATCTTCTGAAGGTAGGTCCTTCATCTAGTAACTCAACGAGCTCACCCTGGTTACAAAAGGTTGTTAATGTGGAGACGCATAGAGGGTCGGATGCGGCAAAGACTAATGAAGAAAACACAAGTTTGAATGATAAGATCTTGGGATTTCAAAAGAAATGGAATGATATTTGTCAGCGTCTTCATCACACAAGTTCACTACCTCAATTTGATATTTCTCAAACAAGGTCCCAAGCTCCAACACTTGAGGTTTCACGCTTTGGTCCGGATTTTAAGGAAAGCAGCAGTAAAGACCCATCACACAATGAATTCCAATATTCTAGTCAAATTTCCTACATGCCCAAAGAGTTGCATGTTTCAGAGACACTGCAAATTCACATGAAGACCCCTTGGGCTGCCCCTTCCCTTATGGCCAATAAGAGTGTGCTTGACCACAGATCATCTTCATCCCCTACTCGTGTGACCACAGATTTAGGATTGGGAACGTTATATACATCAACTGCTCAGGATCCAGATACCCCAAAACTGCAAGATCAAAGAAAGCATCTTCAGCGCTTGTCAGATTCTGTTTCAACTGATTGTGATGGTACGAATGAAAATACTTCTCACCGAACTGCTAGATCTTCCTGCTCTGGTTCAAATTTGGAAGGAAAATTTGATTTAGCAGATTTCAAGTCTCTTAATCGACTTCTCAATGAAAAGGTTGGCTGGCAGGATCAGGCCATACGTGCTATCAGTCAAACTTTGTCCCTTTGTAAATCTGGTGCAGGAAAGCGTAGAGGCTCACATGGTAGAGCAGACATATGGTTGGCTTTCCTTGGACCAGATAGACTTGGAAAAAGGAAAATTGCTTCAGCTCTTGCAGAGACTATATTTGGAAACCCTGAAAGCCTAATCTCTGTGGATCTGGGCTTCCAGGATGGCTTTTACCCATTGAACTCGGTTTTTGAATACCAAAAATCACGTTGTTATGATGTGCTTAGGAGGAAGACAATTTTGGATTATATTGCTGGGGAGTTGAGTAAAAAACCCCATTCTGTTGTCTTTCTTGAAAATGTAGATAAAGCTGATGTTTTGGTGCAGAATAGTTTGTTGCAGGCATTAAGAACAGGAAAATTTTCATATTCGCATGGAAGGGCGATTAGCATCAATAACACTATCTTTGTTGTAACCTCAACTGTCTGTAAAGGTAATGACTCTTTTGTTTTGGAAGAGTCTAAGATGTTTTCTGAGGAAAGAATGCTTGAAGCCAAAAGATGCCAAATGCAATTATTAATTGGACGTGCTTCTGAGGATGCCAAAAGAATTGGTGGCACAAATGTTAAGGTTGTACCCAGAAAAGGGTTTTCCAAATCATCATCTCTGAACAAAAGAAAGCAGGCTGATATTAGTGACTCCAAGGAGGGAGCAACAAGCAAGATGCAGAAACAAGACAGCGAGGCATCTCGATCCTTTCTAGATCTAAATATGCCTGTAGAGGAGGGTGAAGAGGGTGTCAATGACAATGACCATGAAAGTGAATCCATGTCAGAAAACACCTGGTTGAGTGATTTCTTTGATCAAATTGACGAGAAAGTGGTTTTTAAGCCATTCAATTTCAATGAGCTTGCTGAGCAAGTATTGAAAAGAATTGGCATGCTATTTCAAAGGACATTCGGCTCAGAGCTTCAGCTGGAAATTGATCATGAGGTAATAGCATACATACTCGCAGCTGCTTGGTTATCAGACAAGAAAAATGCAGTGGAGGATTGGATTGAACATGTTCTTGGCAAAGGCTTCGTTGAAGCTCAGCAGAAGTACCATCCTGCAGCTCAATATGTAGTGAAACTGGTTAATTGTGAATCCATTTTTGTGGAAGAGCAAGCCCCTGATGTATGCCTTCCAGCTAGAATTAACATGGACTAA 3180 0.4654 MPTPVSIARQCLTDEAARALDDAVAVARRRSHAQTTSLHAISALLALPSSALRDACGRARSGAARFSATYSPRLQFRALELSVGVSLDRLPSSKSTAGGSDEEPPVSNSLMAAIKRSQANQRRHPESFHMFQQSQQGTTTTSFLKVELKHFVLSILDDPIVSRVFAEAGFRSCDIKLALLQPPLPPVQHRFNRSPPVFLCNLDPARPDENIRRILEVLARKNKRNPLLMGVYAKNALRGFVEMVRNGRGGSVLGSELRVVCLEREIGEFVKKGGSGEEKFGVRLKELEQCESSGSGVVVSFGEIEVFLGDDVDVDAVRFVFSGLTRLLEIRGEKVSLLGVAETSHAYSKLLGLFPNVENDWDLHLLTVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPEIRSPVSCTNAPFTRCDTCNKKCEQEVADLLKVGPSSSNSTSSPWLQKVVNVETHRGSDAAKTNEENTSLNDKILGFQKKWNDICQRLHHTSSLPQFDISQTRSQAPTLEVSRFGPDFKESSSKDPSHNEFQYSSQISYMPKELHVSETLQIHMKTPWAAPSLMANKSVLDHRSSSSPTRVTTDLGLGTLYTSTAQDPDTPKLQDQRKHLQRLSDSVSTDCDGTNENTSHRTARSSCSGSNLEGKFDLADFKSLNRLLNEKVGWQDQAIRAISQTLSLCKSGAGKRRGSHGRADIWLAFLGPDRLGKRKIASALAETIFGNPESLISVDLGFQDGFYPLNSVFEYQKSRCYDVLRRKTILDYIAGELSKKPHSVVFLENVDKADVLVQNSLLQALRTGKFSYSHGRAISINNTIFVVTSTVCKGNDSFVLEESKMFSEERMLEAKRCQMQLLIGRASEDAKRIGGTNVKVVPRKGFSKSSSLNKRKQADISDSKEGATSKMQKQDSEASRSFLDLNMPVEEGEEGVNDNDHESESMSENTWLSDFFDQIDEKVVFKPFNFNELAEQVLKRIGMLFQRTFGSELQLEIDHEVIAYILAAAWLSDKKNAVEDWIEHVLGKGFVEAQQKYHPAAQYVVKLVNCESIFVEEQAPDVCLPARINMD 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02148 1059 ProSiteProfiles Clp repeat (R) domain profile. 8 186 IPR004176 -
Gma02g02148 1059 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 695 713 IPR001270 GO:0005524
Gma02g02148 1059 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 774 792 IPR001270 GO:0005524
Gma02g02148 1059 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 807 821 IPR001270 GO:0005524
Gma02g02148 1059 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 544 1058 - -
Gma02g02148 1059 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 543 - -
Gma02g02148 1059 Gene3D - 10 181 IPR036628 -
Gma02g02148 1059 MobiDBLite consensus disorder prediction 494 528 - -
Gma02g02148 1059 MobiDBLite consensus disorder prediction 608 636 - -
Gma02g02148 1059 MobiDBLite consensus disorder prediction 883 899 - -
Gma02g02148 1059 MobiDBLite consensus disorder prediction 614 636 - -
Gma02g02148 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 997 IPR027417 -
Gma02g02148 1059 Pfam AAA domain (Cdc48 subfamily) 696 825 IPR003959 GO:0005524|GO:0016887
Gma02g02148 1059 MobiDBLite consensus disorder prediction 874 932 - -
Gma02g02148 1059 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 544 1058 - -
Gma02g02148 1059 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 543 - -
Gma02g02148 1059 Gene3D - 633 870 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02148 Gma-Chr2 47278430 47284140 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02148 - - gmx:100804458 1980.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01925 14 49960520 49965881 Gma02g02148 02 47278430 47284140 GST
Gma18g00586 18 5747518 5753846 Gma02g02148 02 47278430 47284140 PCT
Gma11g01945 11 24996611 25002502 Gma02g02148 02 47278430 47284140 PCT
Gma02g02148 02 47278430 47284140 Gma18g00586 18 5747518 5753846 PCT
Gma02g02148 02 47278430 47284140 Gma11g01945 11 24996611 25002502 PCT