LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma02g01876	ATGAGAACTGGAAGCTGCGCCGTGCAACAGGGTCTAACCCCGGAGGCCGCGAGCATAGTGAAGCAAGCCGTGACGCTGGCGAAGCGTCGCGGCCATGCACAGGTGACGCCCCTCCACGTGGCGAACACCATGCTCTCCATCACCAACGGTCTTCTGAGAACCGCGTGTCTCCAATCCCACTCCCACCCTCTCCAGTGCAAGGCCTTGGAGCTTTGCTTCAACGTTGCCCTGAATCGCTTACCGGCTTCGACTTCTTCTAGCCCCATGTTGCAAGGCTCTCACCACCACCACTCTCACGCGTGCCCCTCCATCTCAAACGCTTTGGTTGCAgcgttcaaacgcgctcaagcccaccagcgacgtggatccgtcgagaatcagcaacaacctctcttggcagttaaaataaaactcgagcaactcattatttcgatcttggatgaccctagtgttagccgagtcatgagagaagctggtttctctagcacccaagttaaaagcaacgttgaacaagctgtttcttTGGAAATATGCTCTCAGGATAATGGTAGTGGTAAAAATAACAACAATAGTAATAAGGCAAAGGAAAACAATAGCAGTGGAGAGAAAGGGTCGGTGTTGGATCCTATTAGGGTTGAGGATGTTGCTAGTGTTATTGAAAATTTGGGGAGTGAGAGAAAGAGAAGTGTTGTGATTGTGGGAGAGTGTGTTACTAGTCTTGAAGGTGTAGTTAGGGGAGTGATGGAAAAAGTTGATAAAGGGGATGTTGGTGATGAGTGTACTCTTAGGGGTGTTAAGTTTATCTCTCTTTCTCTTTCTTCTTTTGGGAATGTTTCGAGAGTGGAGGTGGAGCAAAAGGTGGGGGAGCTTAGGAGTCTTGTGAAGGCAAGTGAACATAGCAAAGGGTATGTTTTGTATTTGGGGGATCTCAAATGGGTGTTTGATTTTAGGGCTCGTGGATCACAAGGGGGAGGGTGTTATTGTCCTGTGGATCACATGGTAGTAGAGATTGGGAAGCTTGTGAATGGGGTTGAAGAGAATGGTGCAAGGTTTTGGGTGATGGGTGTTGCCACTTTTCAAGCTTACATGAGATGCAAAAATGGCCAGCCATCGTTGGAGACTCTTTGGGGTCTTCATCCTATCACTATTCCTGCGGGGAGCTTGCGCTTGAGTCTCATCACTGACAGTGGTGTACAAAACCAGCCCACAAACGAGAAAGCTGACAACAGAACTACCTGGCTCTTACTTGAAGGAGTGGGGGATGATCACAAACAACAACCTTGCTTCGCGGAACCTTCCACCAAGAATGAGACCACCGAAGTTCGAAGCTTGCAAAGCAGTAGTACTTGTAATAGTGACTCAAGTTCAACCCTTCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAATCACCCATAATGATCAGAACTGTGTCCCAGTGGGAGAGCTTTGCAAAAAGTGGAACTCTATGTGTAGTTCAATCCAAAAGCAACCTTATCCTTCCGACAAAACCCTCTCATTATCCTCGGTGTCACCTTCTTCATCAAACTCAAACTTCTCATACGAACAGCAGCATCCTAATTTGCTCCAAACCCATCACGAGTGGCAAGTGGGTGAACCACCCAAAGATTCATTGAACAACTACCATTTCTGGATCTCCAACAATGGCACCAACAACAACACCAATGAACCCACTTTGAGAGTGTACATTCCAGAGAATAACAATAAGCAACCATTCTCATCACCAAATCCAAGTTCAAACCCTAATTCCACTTCTTCCAGTGACATCATGGAAGTGGAGCACGTGAGAGAGTTCAAAGAGTTAAACACGGAGAATCTGAAAACACTGTGCAATGCTTTGGAGAAAAAAGTGCCGTGGCAGAAAGACATAATACCCGAAATTGCGAGCACCCTTTTGCAATGCCGTTCTGGCATGGTGAGAAGAAAAGGGAAAGTGATGAGAAACAGTGAAGAAGTGAAAGAAGAGACGTGGTTGTTCTTCCAAGGTGTTGATGTTGAAGCCAAGGAGAAAATAGCAAGAGAACTAGCTAGACTTGTTTTTGGGTCCCAAAACGACGTCGTTTCGATTGCACTTAGCACTTTTGCTTCAACAAGAGCAGATTCTACTGAAGATTATAGCAGGAACAAAAGATCAAGAGAAGAAACAAGTTGCAGTTACATTGAGAGGTTCGCAGAAGCAATGGCTTGTAACCCTCACAGAGTGTTTCTTGTTGAAGATATAGAGCAAGCAGATTATTGTTCTCAACTTGGTTTCAAAAGGGCCATTGAGAGGGGAAGGGTTGCGGATTCAAAAGGCGAAGAGGTTGCACTTTGCGATGCTATCATCATTCTAAGCTGTGAAAGTTTCAGTTCTAGGTCAAGGGCTTGTTCTCCGTCGGTCAAACAAAAACCGCTGACTGAGGAAGAAAAGAATGGTGGTGACATGGTTGCAACTTTGGAGGTGACAAGTCCTTGTGTTTCTTTGGATTTGAATATTTCCATTGATGATGAAAACGAGGTTGAGGATAAGTCAGTGGATGAAATTGGGCTTCTTGAATCAGTAGACAAAAAGGTTATCTTCAACTTTCAGGAATTGTGA	2604	0.4213	MRTGSCAVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVANTMLSITNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSSSPMLQGSHHHHSHACPSISNALVAAFKRAQAHQRRGSVENQQQPLLAVKIKLEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQDNGSGKNNNNSNKAKENNSSGEKGSVLDPIRVEDVASVIENLGSERKRSVVIVGECVTSLEGVVRGVMEKVDKGDVGDECTLRGVKFISLSLSSFGNVSRVEVEQKVGELRSLVKASEHSKGYVLYLGDLKWVFDFRARGSQGGGCYCPVDHMVVEIGKLVNGVEENGARFWVMGVATFQAYMRCKNGQPSLETLWGLHPITIPAGSLRLSLITDSGVQNQPTNEKADNRTTWLLLEGVGDDHKQQPCFAEPSTKNETTEVRSLQSSSTCNSDSSSTLPAWLQQYKNENKGITHNDQNCVPVGELCKKWNSMCSSIQKQPYPSDKTLSLSSVSPSSSNSNFSYEQQHPNLLQTHHEWQVGEPPKDSLNNYHFWISNNGTNNNTNEPTLRVYIPENNNKQPFSSPNPSSNPNSTSSSDIMEVEHVREFKELNTENLKTLCNALEKKVPWQKDIIPEIASTLLQCRSGMVRRKGKVMRNSEEVKEETWLFFQGVDVEAKEKIARELARLVFGSQNDVVSIALSTFASTRADSTEDYSRNKRSREETSCSYIERFAEAMACNPHRVFLVEDIEQADYCSQLGFKRAIERGRVADSKGEEVALCDAIIILSCESFSSRSRACSPSVKQKPLTEEEKNGGDMVATLEVTSPCVSLDLNISIDDENEVEDKSVDEIGLLESVDKKVIFNFQEL	867

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma02g01876	867	MobiDBLite	consensus disorder prediction	179	204	-	-
	Gma02g01876	867	MobiDBLite	consensus disorder prediction	502	523	-	-
	Gma02g01876	867	Pfam	Clp amino terminal domain, pathogenicity island component	137	173	IPR004176	-
	Gma02g01876	867	Pfam	Clp amino terminal domain, pathogenicity island component	23	50	IPR004176	-
	Gma02g01876	867	Gene3D	-	205	380	IPR027417	-
	Gma02g01876	867	ProSiteProfiles	Clp repeat (R) domain profile.	8	176	IPR004176	-
	Gma02g01876	867	Gene3D	-	9	174	IPR036628	-
	Gma02g01876	867	PANTHER	CHAPERONE PROTEIN CLPD, CHLOROPLASTIC	1	866	-	-
	Gma02g01876	867	MobiDBLite	consensus disorder prediction	574	596	-	-
	Gma02g01876	867	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	608	790	IPR027417	-
	Gma02g01876	867	MobiDBLite	consensus disorder prediction	179	206	-	-
	Gma02g01876	867	PANTHER	PROTEIN SMAX1-LIKE 3	1	866	-	-
	Gma02g01876	867	SUPERFAMILY	Double Clp-N motif	12	169	IPR036628	-
	Gma02g01876	867	Gene3D	-	593	843	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma02g01876	Gma-Chr2	43529634	43533685	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma02g01876	-		-	gmx:100807485	1613.97

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma02g01876	02	43529634	43533685	Gma18g00246	18	2010302	2015492	ECH
	Gma02g01876	02	43529634	43533685	Gma11g02331	11	38700191	38704926	ECH
	Gma02g01876	02	43529634	43533685	Gma02g01876	02	43529634	43533685	ECH
	Gma02g01876	02	43529634	43533685	Gma11g01945	11	24996611	25002502	ECH
	Gma02g01876	02	43529634	43533685	Gma18g00586	18	5747518	5753846	ECH
	Gma10g00729	10	8997349	9001602	Gma02g01876	02	43529634	43533685	GST