Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0351 . . . . . . Aed11g0736 Aed1g1859 . Aev09g2615 . Ahy19g3176 . Aip09g03649 . . . . Apr7g1235 . . . . Bach10g01227 . . Bva01g01732 Bva11g00750 Car02g01015 . Cca06g00336 Cca02g02653 . . . Dod06g0170 . . . . . Gma01g00786 . . . . . . Lal6g0679 . Lal18g1016 . . . Lan11g0690 . Lan11g0690 . . . . . . . . . . . . . . . Lja2g1440 . Mal1g0352 . . Mepo7g01384 . Mesa17g02568 . . Mtr1g4197 . . . . Phco8g03115 . . Psa6g5181 . . . . . . . . . . Pvu3g0315 . . . Seca10g02103 . Spst2g01941 Ssu2g1264 Ssu7g0327 Sto11g0698 Sto6g2779 Tpr1g0307 . . Trre9g03242 Tsu01g04880 . . Vian10g01674 . Vifa3g03568 . Vimu7g04228 . Viun2g00577 . Vivi1g03596 Vra11g1497 Vra8g2554
Vvi1g0352 Acco11g0355 . Accr9g01851 . Adu09g02738 . . Aed1g1860 . Aev09g2614 . Ahy19g3178 . Aip09g03651 Alju09g0422 . . . Apr7g1234 . Arst9g03670 . . . Bisa11g0677 . Bva01g01731 . Car06g01527 . . Cca02g02652 Dere09g2033 . . Dod06g0169 Enph13g0530 . Glsi05g0405 . . . . . . . . . Lal6g0678 . . . . . Lan11g0689 . . . . . Lapu7g02418 . Lasa6g04646 . Lele49g1295 . Lele51g1303 Lele52g1491 . . . . . Lja5g0275 Mal1g0353 . Mepo4g04719 Mepo7g01374 . Mesa17g02558 Mibi12g0333 . Mtr1g4196 . . . Phco6g02939 . Prci10g2627 . . . Pste4g00743 . . . . . Pumo3g00290 . Pvu7g0288 Pvu3g0314 Rops6g03300 . Seca8g07873 . Spst10g01434 Spst2g01940 . Ssu7g0328 . Sto6g2777 Tpr1g0308 . Trre1g05997 Trre9g03258 Tsu01g04879 . Vian3g00268 . Vifa3g03567 . Vimu3g03559 Vimu7g04229 Viun7g03841 . Vivi1g03598 Vivi1g03597 . Vra8g2553
Vvi1g0353 . . . . . . . . . . . . . . . . . . Apr7g1232 . . . . . . . Bva01g01729 Bva11g00749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0354 . . . . . . . . . . . . . . . . . . Apr7g1231 . . . . . . . Bva01g01727 Bva11g00748 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0355 . . . . . . . . . . . . . . . . . . Apr7g1230 . . . . . . . Bva01g01725 Bva11g00747 . . Cca06g00333 . . . . . . . . . . Gma01g00785 . . . . . . . . Lal18g1017 . . . . . . . . . . . . . . . . . . . . . Lja2g1442 . Mal8g2712 . . . . . . . Mtr5g2021 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1260 . . . Tpr2g2260 . . . Tsu05g02222 . . . . . . . . . . . Vra11g1501 .
Vvi1g0356 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g01723 . . . . . . . . . . . . . . . . . . . . . . . Lal18g1018 . . . . . . . . . . . . . . . . . . . . . . . Mal8g2711 . . . . . . . Mtr5g2023 . . . . Phco8g03119 . . . . . . . . . . . Pumo8g00571 . Pvu3g0310 . . . Seca10g02109 . Spst2g01938 . . . Sto6g2776 Tpr2g2261 . . . Tsu05g02219 . . Vian10g01670 . . . Vimu7g04233 . . . . . .
Vvi1g0357 . . . . . . . . . . . . . . . . . . Apr7g1229 . . . . . . . Bva01g01722 Bva11g00746 . . Cca06g00332 . . . . . . . . . . . . . . . . . Lal6g0677 . Lal18g1019 . . . Lan11g0688 . Lan11g0688 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1259 . Sto11g0697 . . . . . . . . . . . . . . . . . . .
Vvi1g0358 . . . . . . . Aed1g1862 . Aev09g2612 . Ahy19g3180 . Aip09g03652 . . . . . . . . . . . . Bva01g01719 Bva11g00744 Car04g01556 . . Cca02g02650 . . . Dod06g0167 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g0277 Mal1g0355 . . . . . . . Mtr1g4194 . . . . . . . Psa6g5176 . . . . . . . . . . . . . . . . . . Ssu7g0330 Sto11g0696 Sto6g2773 Tpr1g0310 . . . Tsu01g04877 . . . . . . . . . . . . Vra8g2551
Vvi1g0359 . . . . Adu09g02733 . . Aed1g1863 . Aev09g2611 . Ahy19g3181 . Aip09g03653 . . . . . . Arst9g03660 . Bach10g01234 . Bisa11g0671 . Bva01g01718 Bva11g00743 Car04g01555 . . Cca02g02649 . . . Dod06g0166 . . Glsi05g0399 . . . . . . . . . . . . . . . . . . . . . . . Lasa6g04642 . . . . . . . . . . . Mal1g0357 . Mepo4g04716 . . . . . Mtr1g4193 . Phac7g00433 . Phco6g02936 . . . Psa6g5175 . Pste4g00758 . . . . . Pumo3g00293 . Pvu7g0292 . Rops6g03297 . Seca8g07870 . Spst10g01430 . . Ssu7g0331 Sto11g0695 Sto6g2772 Tpr1g0311 . Trre1g05994 . Tsu01g04876 . Vian3g00272 . Vifa3g03563 . Vimu3g03556 . Viun7g03837 . Vivi1g03603 . . Vra8g2550
Vvi1g0360 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 36 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0351 Chr1 3324988 3325941 -
Aed Aed11g0736 Chr11 9186567 9187562 -
Aed Aed1g1859 Chr1 15960260 15961419 -
Aev Aev09g2615 Chr09 27350874 27351713 +
Ahy Ahy19g3176 Chr19 154912682 154913545 -
Aip Aip09g03649 Chr09 143342234 143343291 -
Apr Apr7g1235 Chr7 19427675 19429106 +
Bach Bach10g01227 Chr10 9472588 9473538 -
Bva Bva01g01732 Chr01 18241526 18242652 +
Bva Bva11g00750 Chr11 10377495 10378659 +
Car Car02g01015 Chr02 20291309 20292871 -
Cca Cca06g00336 Chr06 9693467 9694874 +
Cca Cca02g02653 Chr02 47766144 47767065 +
Dod Dod06g0170 Chr06 2535500 2536939 +
Gma Gma01g00786 Chr01 23251985 23253430 +
Lal Lal6g0679 Chr6 4465378 4466289 +
Lal Lal18g1016 Chr18 13172836 13173804 -
Lan Lan11g0690 Chr11 5830969 5832029 +
Lan Lan11g0690 Chr11 5830969 5832029 +
Lja Lja2g1440 Chr2 13826373 13827712 -
Mal Mal1g0352 Chr1 3974175 3974921 -
Mepo Mepo7g01384 Chr7 21772358 21773683 +
Mesa Mesa17g02568 Chr17 44380433 44381621 +
Mtr Mtr1g4197 Chr1 53566475 53567478 +
Phco Phco8g03115 Chr8 45640882 45641808 -
Psa Psa6g5181 Chr6 446306515 446307324 +
Pvu Pvu3g0315 Chr3 2916335 2917513 +
Seca Seca10g02103 Chr10 24096505 24097437 -
Spst Spst2g01941 Chr2 18507481 18508419 +
Ssu Ssu2g1264 Chr2 54791557 54792525 +
Ssu Ssu7g0327 Chr7 5600098 5600873 -
Sto Sto11g0698 Chr11 7988187 7989110 +
Sto Sto6g2779 Chr6 34915985 34916956 +
Tpr Tpr1g0307 Chr1 2633634 2634723 -
Trre Trre9g03242 Chr9 41061858 41062799 -
Tsu Tsu01g04880 Chr01 55790352 55791585 +
Vian Vian10g01674 Chr10 28009391 28010323 +
Vifa Vifa3g03568 Chr3 1027056568 1027057323 +
Vimu Vimu7g04228 Chr7 40914021 40914953 -
Viun Viun2g00577 Chr2 14331174 14332390 -
Vivi Vivi1g03596 Chr1 77495416 77496174 -
Vra Vra11g1497 Chr11 18345472 18346769 -
Vra Vra8g2554 Chr8 43461030 43461850 +
Vvi Vvi1g0352 Chr1 3330031 3332089 +
Acco Acco11g0355 Chr11 4939445 4941200 -
Accr Accr9g01851 Chr9 40238795 40244044 +
Adu Adu09g02738 Chr09 114920959 114923268 -
Aed Aed1g1860 Chr1 15964089 15965606 +
Aev Aev09g2614 Chr09 27346376 27348086 -
Ahy Ahy19g3178 Chr19 154930738 154932987 +
Aip Aip09g03651 Chr09 143360176 143362473 +
Alju Alju09g0422 Chr09 6037040 6039477 -
Apr Apr7g1234 Chr7 19410734 19420575 -
Arst Arst9g03670 Chr9 112817310 112819632 -
Bisa Bisa11g0677 Chr11 19145122 19148011 -
Bva Bva01g01731 Chr01 18233887 18236424 -
Car Car06g01527 Chr06 14889432 14893337 +
Cca Cca02g02652 Chr02 47755841 47757706 -
Dere Dere09g2033 Chr09 27258822 27261346 +
Dod Dod06g0169 Chr06 2522078 2524786 -
Enph Enph13g0530 Chr13 11581247 11584062 +
Glsi Glsi05g0405 Chr05 53085662 53090004 -
Lal Lal6g0678 Chr6 4450614 4454061 -
Lan Lan11g0689 Chr11 5805543 5808561 -
Lapu Lapu7g02418 Chr7 40471151 40473026 -
Lasa Lasa6g04646 Chr6 656408760 656410490 -
Lele Lele49g1295 Chr49 8758880 8761482 -
Lele Lele51g1303 Chr51 8732279 8734688 -
Lele Lele52g1491 Chr52 18926261 18930197 +
Lja Lja5g0275 Chr5 2426712 2428925 +
Mal Mal1g0353 Chr1 3988142 3990525 +
Mepo Mepo4g04719 Chr4 56630010 56632252 -
Mepo Mepo7g01374 Chr7 21617435 21619819 -
Mesa Mesa17g02558 Chr17 44141951 44153167 -
Mibi Mibi12g0333 Chr12 6944470 6946752 -
Mtr Mtr1g4196 Chr1 53554842 53557158 -
Phco Phco6g02939 Chr6 50507800 50509693 -
Prci Prci10g2627 Chr10 34590774 34593400 +
Pste Pste4g00743 Chr4 5773581 5775378 +
Pumo Pumo3g00290 Chr3 3776015 3778075 +
Pvu Pvu7g0288 Chr7 2189601 2191708 +
Pvu Pvu3g0314 Chr3 2903813 2906876 -
Rops Rops6g03300 Chr6 57147555 57149920 -
Seca Seca8g07873 Chr8 176180980 176188787 -
Spst Spst10g01434 Chr10 14859727 14861624 -
Spst Spst2g01940 Chr2 18501160 18503016 -
Ssu Ssu7g0328 Chr7 5620280 5622192 +
Sto Sto6g2777 Chr6 34899033 34902420 -
Tpr Tpr1g0308 Chr1 2641264 2643641 +
Trre Trre1g05997 Chr1 64255834 64257926 -
Trre Trre9g03258 Chr9 41239235 41243928 +
Tsu Tsu01g04879 Chr01 55780675 55783105 -
Vian Vian3g00268 Chr3 2474096 2475952 +
Vifa Vifa3g03567 Chr3 1026559810 1026561591 -
Vimu Vimu3g03559 Chr3 48348097 48349946 -
Vimu Vimu7g04229 Chr7 40929241 40934870 +
Viun Viun7g03841 Chr7 38481790 38483705 -
Vivi Vivi1g03598 Chr1 77546191 77547863 +
Vivi Vivi1g03597 Chr1 77528584 77530617 +
Vra Vra8g2553 Chr8 43456087 43458016 -
Vvi Vvi1g0353 Chr1 3332583 3333672 -
Apr Apr7g1232 Chr7 19408169 19410262 +
Bva Bva01g01729 Chr01 18230442 18232529 +
Bva Bva11g00749 Chr11 10372354 10373751 +
Vvi Vvi1g0354 Chr1 3339155 3340515 -
Apr Apr7g1231 Chr7 19404549 19406718 +
Bva Bva01g01727 Chr01 18221399 18225286 +
Bva Bva11g00748 Chr11 10369229 10370860 +
Vvi Vvi1g0355 Chr1 3341421 3358024 -
Apr Apr7g1230 Chr7 19398761 19401850 +
Bva Bva01g01725 Chr01 18207669 18209321 +
Bva Bva11g00747 Chr11 10363181 10364930 +
Cca Cca06g00333 Chr06 9420444 9428657 -
Gma Gma01g00785 Chr01 22930244 22933393 +
Lal Lal18g1017 Chr18 13185297 13186915 -
Lja Lja2g1442 Chr2 13852274 13855815 -
Mal Mal8g2712 Chr8 67781662 67782153 -
Mtr Mtr5g2021 Chr5 25213314 25219857 +
Ssu Ssu2g1260 Chr2 54634020 54636930 +
Tpr Tpr2g2260 Chr2 27070345 27075387 +
Tsu Tsu05g02222 Chr05 28727629 28733925 -
Vra Vra11g1501 Chr11 18402571 18405632 -
Vvi Vvi1g0356 Chr1 3358934 3365226 -
Bva Bva01g01723 Chr01 18200742 18202953 +
Lal Lal18g1018 Chr18 13190416 13194244 -
Mal Mal8g2711 Chr8 67734453 67738568 -
Mtr Mtr5g2023 Chr5 25261952 25266060 +
Phco Phco8g03119 Chr8 45680507 45687842 -
Pumo Pumo8g00571 Chr8 20102570 20106625 +
Pvu Pvu3g0310 Chr3 2852384 2859217 +
Seca Seca10g02109 Chr10 24138703 24142165 -
Spst Spst2g01938 Chr2 18468640 18473115 +
Sto Sto6g2776 Chr6 34896163 34898407 +
Tpr Tpr2g2261 Chr2 27078043 27082000 +
Tsu Tsu05g02219 Chr05 28612908 28616678 -
Vian Vian10g01670 Chr10 27963268 27965687 +
Vimu Vimu7g04233 Chr7 40961262 40963853 -
Vvi Vvi1g0357 Chr1 3369210 3370248 -
Apr Apr7g1229 Chr7 19395019 19396368 +
Bva Bva01g01722 Chr01 18197244 18198750 +
Bva Bva11g00746 Chr11 10359823 10361569 +
Cca Cca06g00332 Chr06 9384301 9385746 +
Lal Lal6g0677 Chr6 4446989 4448438 +
Lal Lal18g1019 Chr18 13195530 13197763 -
Lan Lan11g0688 Chr11 5796417 5797891 +
Lan Lan11g0688 Chr11 5796417 5797891 +
Ssu Ssu2g1259 Chr2 54581682 54582263 +
Sto Sto11g0697 Chr11 7976515 7980039 +
Vvi Vvi1g0358 Chr1 3375071 3376157 +
Aed Aed1g1862 Chr1 15976136 15977772 +
Aev Aev09g2612 Chr09 27335182 27336432 -
Ahy Ahy19g3180 Chr19 154939677 154940956 +
Aip Aip09g03652 Chr09 143368895 143370080 +
Bva Bva01g01719 Chr01 18181468 18182968 -
Bva Bva11g00744 Chr11 10347702 10349375 -
Car Car04g01556 Chr04 15923409 15925184 -
Cca Cca02g02650 Chr02 47727811 47729566 -
Dod Dod06g0167 Chr06 2509002 2510846 -
Lja Lja5g0277 Chr5 2437791 2439216 +
Mal Mal1g0355 Chr1 4005907 4007421 +
Mtr Mtr1g4194 Chr1 53537954 53539423 -
Psa Psa6g5176 Chr6 445825561 445827389 -
Ssu Ssu7g0330 Chr7 5643656 5644765 +
Sto Sto11g0696 Chr11 7961397 7962612 -
Sto Sto6g2773 Chr6 34861248 34862394 -
Tpr Tpr1g0310 Chr1 2654316 2656196 +
Tsu Tsu01g04877 Chr01 55768397 55769816 -
Vra Vra8g2551 Chr8 43437554 43439195 -
Vvi Vvi1g0359 Chr1 3380069 3395733 -
Adu Adu09g02733 Chr09 114891637 114897902 +
Aed Aed1g1863 Chr1 15984676 15992055 -
Aev Aev09g2611 Chr09 27322299 27328366 +
Ahy Ahy19g3181 Chr19 154950747 154956827 -
Aip Aip09g03653 Chr09 143379405 143385496 -
Arst Arst9g03660 Chr9 112788045 112794297 +
Bach Bach10g01234 Chr10 9553608 9563604 -
Bisa Bisa11g0671 Chr11 18944000 18946798 +
Bva Bva01g01718 Chr01 18166230 18174382 +
Bva Bva11g00743 Chr11 10332827 10341281 +
Car Car04g01555 Chr04 15906056 15915365 +
Cca Cca02g02649 Chr02 47707561 47717287 +
Dod Dod06g0166 Chr06 2493937 2501919 +
Glsi Glsi05g0399 Chr05 52924573 52938311 +
Lasa Lasa6g04642 Chr6 656094366 656101684 +
Mal Mal1g0357 Chr1 4088226 4098759 -
Mepo Mepo4g04716 Chr4 56597662 56609178 +
Mtr Mtr1g4193 Chr1 53514260 53526615 +
Phac Phac7g00433 Chr7 2386193 2397497 -
Phco Phco6g02936 Chr6 50464636 50476568 +
Psa Psa6g5175 Chr6 445354191 445372987 +
Pste Pste4g00758 Chr4 5886086 5886894 -
Pumo Pumo3g00293 Chr3 3806656 3820190 -
Pvu Pvu7g0292 Chr7 2223116 2232955 -
Rops Rops6g03297 Chr6 57088709 57104079 +
Seca Seca8g07870 Chr8 176135286 176137047 +
Spst Spst10g01430 Chr10 14823255 14835705 +
Ssu Ssu7g0331 Chr7 5664748 5674243 -
Sto Sto11g0695 Chr11 7939759 7946380 +
Sto Sto6g2772 Chr6 34839205 34851892 +
Tpr Tpr1g0311 Chr1 2680264 2689840 -
Trre Trre1g05994 Chr1 64222767 64231094 +
Tsu Tsu01g04876 Chr01 55752403 55759210 +
Vian Vian3g00272 Chr3 2510896 2519447 -
Vifa Vifa3g03563 Chr3 1023709842 1023723085 -
Vimu Vimu3g03556 Chr3 48297995 48306888 +
Viun Viun7g03837 Chr7 38434150 38443326 +
Vivi Vivi1g03603 Chr1 77608002 77617795 -
Vra Vra8g2550 Chr8 43416146 43425838 +
Vvi Vvi1g0360 Chr1 3396142 3401075 -