Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1300 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva09g01088 Bva07g01459 . . . . . . . . . . . . . . . . . . . . . . Lal2g0679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1302 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa1g0152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1303 . . . . . . . . . . . . . . . . . . . . Arst7g02814 . . . . . Bva09g01089 Bva07g01458 . . . . . . . . . . . . Gma08g01552 . . . Gso8g1405 . . . . . Lal2g0678 . . Lal11g1528 . . . . . . . . . . . . . . . . . . . . . . Mepo6g02802 . Mesa5g01794 . . . . . . . . . . . . . . . . . . . Pumo4g03042 . Pvu5g0624 . Rops7g01578 . Seca4g06539 . . . . . . . . . Trre11g02905 . . . . . Vifa1g08321 . . . . . . . . .
Vvi19g1304 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva09g01090 Bva07g01456 . . . . . . . . . . . . Gma08g01550 . . . Gso8g1404 . . . . . . Lal20g0467 . . . . . . . . . . Lasa1g04619 . . . . . . . . . Lja3g3938 . . . Mepo6g02661 . Mesa5g01897 . . . . . . . Phco10g00512 . . . . . . . . . . . Pumo4g02963 . Pvu5g0524 . Rops7g01702 . Seca4g06684 . . . . . . . . . Trre11g03411 . . . . . Vifa1g08829 . . . . . . . . .
Vvi19g1305 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1306 . . . . . . . . . . . . . . . . . . . Apr9g1888 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1307 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1308 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1309 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Arst Arst7g02814 Chr7 72030662 72036056 +
Lal Lal2g0679 Chr2 4131543 4137287 +
Vvi Vvi19g1300 Chr19 21903685 21911373 -
Bva Bva09g01088 Chr09 5586855 5590642 -
Bva Bva07g01459 Chr07 14615978 14619603 +
Lal Lal2g0679 Chr2 4131543 4137287 +
Vvi Vvi19g1301 Chr19 21918336 21918539 -
Vvi Vvi19g1302 Chr19 21921001 21933586 +
Psa Psa1g0152 Chr1 9972368 9975424 -
Vvi Vvi19g1303 Chr19 21934772 21949752 -
Arst Arst7g02814 Chr7 72030662 72036056 +
Bva Bva09g01089 Chr09 5591416 5597611 -
Bva Bva07g01458 Chr07 14609333 14615132 +
Gma Gma08g01552 Chr08 13695896 13700925 +
Gso Gso8g1405 Chr8 13511152 13517832 +
Lal Lal2g0678 Chr2 4121108 4129221 +
Lal Lal11g1528 Chr11 18418652 18424134 -
Mepo Mepo6g02802 Chr6 38466178 38472370 +
Mesa Mesa5g01794 Chr5 27640756 27645494 -
Pumo Pumo4g03042 Chr4 59200603 59213670 +
Pvu Pvu5g0624 Chr5 8404452 8406732 +
Rops Rops7g01578 Chr7 23690059 23698366 -
Seca Seca4g06539 Chr4 132131512 132139072 -
Trre Trre11g02905 Chr11 38589730 38593455 -
Vifa Vifa1g08321 Chr1 1300261042 1300265021 -
Vvi Vvi19g1304 Chr19 21955354 21961907 -
Bva Bva09g01090 Chr09 5598234 5600613 +
Bva Bva07g01456 Chr07 14602229 14604755 -
Gma Gma08g01550 Chr08 13689074 13692307 -
Gso Gso8g1404 Chr8 13506161 13508932 -
Lal Lal20g0467 Chr20 3815207 3819490 +
Lasa Lasa1g04619 Chr1 759539711 759544202 -
Lja Lja3g3938 Chr3 77563974 77565800 +
Mepo Mepo6g02661 Chr6 36752231 36754722 -
Mesa Mesa5g01897 Chr5 29478559 29481025 +
Phco Phco10g00512 Chr10 5342440 5344677 +
Pumo Pumo4g02963 Chr4 57515467 57518791 -
Pvu Pvu5g0524 Chr5 6056682 6059648 +
Rops Rops7g01702 Chr7 26358471 26362007 +
Seca Seca4g06684 Chr4 136777984 136781277 +
Trre Trre11g03411 Chr11 46447962 46452734 -
Vifa Vifa1g08829 Chr1 1395727652 1395729008 -
Vvi Vvi19g1305 Chr19 21964731 21965284 -
Vvi Vvi19g1306 Chr19 21966252 21967889 -
Apr Apr9g1888 Chr9 27520960 27530222 +
Vvi Vvi19g1307 Chr19 21974495 21974791 -
Vvi Vvi19g1308 Chr19 21981775 21982173 -
Vvi Vvi19g1309 Chr19 22004913 22008384 -