Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1260 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1261 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1263 . . . . Adu07g01561 . . . . . . . . . . . . . . Apr9g1910 Arst7g01986 . . . . . . Bva07g01460 . . . . . . . . . . . . Gma08g01553 . . . Gso8g1406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pte15g01555 . . . . Pvu5g0525 . . . . . Spst5g01702 . . . . . . . . . . . . . . . Vimu4g01629 . . . . . . .
Vvi19g1264 . . . . . . . . . . . . . . . . . . . Apr9g1909 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1265 . . . . . . . . . . . . . . . . . . . Apr9g1908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1266 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1268 . . . . . . . . . . . . . . . . . . . Apr9g1907 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal2g3265 . . . . . . . Mtr3g1717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr3g3719 . . . Tsu03g00874 . . . . . . . . . . . . .
   
Previous Page 2799 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Mal Mal2g3265 Chr2 48637287 48648116 -
Mtr Mtr3g1717 Chr3 29327432 29338799 +
Tpr Tpr3g3719 Chr3 41499976 41510918 -
Tsu Tsu03g00874 Chr03 8017485 8028401 -
Apr Apr9g1910 Chr9 27674765 27676272 +
Apr Apr9g1909 Chr9 27670117 27671642 +
Apr Apr9g1908 Chr9 27664769 27666301 +
Apr Apr9g1907 Chr9 27659180 27660695 +
Vvi Vvi19g1260 Chr19 21197352 21198093 -
Vvi Vvi19g1261 Chr19 21204731 21206814 -
Vvi Vvi19g1262 Chr19 21234385 21243578 +
Vvi Vvi19g1263 Chr19 21265537 21266592 +
Adu Adu07g01561 Chr07 37672756 37676604 -
Apr Apr9g1910 Chr9 27674765 27676272 +
Arst Arst7g01986 Chr7 36720258 36722566 +
Bva Bva07g01460 Chr07 14625423 14627030 +
Gma Gma08g01553 Chr08 13725221 13727377 +
Gso Gso8g1406 Chr8 13541428 13544070 +
Pte Pte15g01555 Chr15 12951314 12954512 +
Pvu Pvu5g0525 Chr5 6076203 6080368 +
Spst Spst5g01702 Chr5 52317132 52320372 -
Vimu Vimu4g01629 Chr4 17500371 17503942 +
Vvi Vvi19g1264 Chr19 21267519 21281525 +
Apr Apr9g1909 Chr9 27670117 27671642 +
Vvi Vvi19g1265 Chr19 21281602 21282236 +
Apr Apr9g1908 Chr9 27664769 27666301 +
Vvi Vvi19g1266 Chr19 21300556 21309323 +
Vvi Vvi19g1267 Chr19 21321945 21324563 +
Vvi Vvi19g1268 Chr19 21334074 21334496 +
Apr Apr9g1907 Chr9 27659180 27660695 +
Vvi Vvi19g1269 Chr19 21349044 21351449 +
Mal Mal2g3265 Chr2 48637287 48648116 -
Mtr Mtr3g1717 Chr3 29327432 29338799 +
Tpr Tpr3g3719 Chr3 41499976 41510918 -
Tsu Tsu03g00874 Chr03 8017485 8028401 -