Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1030 . . . . Adu07g02229 . . . . . . . . . . . . . . . Arst7g02847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal20g0407 . . . . . . . . . . Lasa1g04767 . . . . . . . . . . . . . Mepo6g02831 . Mesa5g01747 . . . . . . . Phco10g00643 . . . . . Pste3g02071 . . Pte15g01603 . . Pumo4g03057 . Pvu5g0646 . Rops7g01556 . Seca4g06510 . . . . . . . . . Trre11g02815 . . . Vian11g01453 . Vifa1g08388 . . . Viun5g02311 . . . . .
Vvi19g1031 Acco01g3141 . Accr1g02787 . Adu07g02230 . Aed1g0433 . Aev10g1194 . Ahy18g1652 . Aip08g01825 . Alju02g0902 . Amo18g2030 . Apr2g0536 . Arst7g02849 . Bach13g00675 . Bisa12g0398 . Bva09g01018 Bva09g01018 . . Cca10g01258 . Dere08g0251 . Dod10g0805 . Enph3g0847 . Glsi14g0869 . . . . . . . . . . . . Lal20g0408 . . . . . . . . . . Lasa1g04766 . Lele09g0556 Lele10g0512 Lele11g0564 Lele12g0768 . . . . Lja3g3849 . . . Mepo6g02833 . Mesa5g01746 . Mibi01g0798 . . . . . Phco10g00644 . Prci7g1660 . . . Pste3g02073 . . Pte15g01604 . . Pumo4g03058 . Pvu5g0647 . Rops7g01554 . Seca4g06508 . . . Ssu8g1324 . . . . . Trre11g02810 . . . Vian11g01452 . Vifa1g08390 . . . . . . . . .
Vvi19g1032 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma08g01644 . . . Gso8g1482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1035 Acco01g3142 . Accr1g02790 . Adu07g02231 . . . . . . . . . Alju02g0891 . . . . . Arst7g02690 . Bach13g00678 . Bisa12g0399 . . . . . . . Dere08g0252 . . . . . Glsi14g0871 . . Gma15g02343 . . . . . . . . . . . . . . . . . . . . Lasa1g04762 . . . . . . . . . . . . . . . Mesa5g01737 . Mibi01g0786 . . . . . Phco10g00645 . Prci7g1662 . . . Pste3g02075 . Pte17g00270 Pte15g01605 . . Pumo4g03061 . Pvu5g0651 Pvu11g1671 Rops7g01548 . . . . . . . . . . . . . . . Vian11g01516 . Vifa1g03517 . . Vimu5g00596 Viun5g02318 . Vivi2g05911 . . .
Vvi19g1036 Acco01g3152 . . . . . . . . . . . . . Alju02g0888 . . . . . Arst7g02691 . . . Bisa12g0404 . . . . . . . Dere08g0259 . . . . . Glsi14g0886 . . Gma15g02344 . . . . . . . . . . . . . . . . . . Lapu5g01188 . Lasa1g04760 . . . . . . . . . . . . . Mepo6g02838 . Mesa5g01734 . Mibi01g0781 . . . . . Phco10g00647 . Prci7g1666 . . . . . . . . . Pumo4g03062 . Pvu5g0652 Pvu11g1670 Rops7g01547 . . . . . . . . . . . . . . . Vian11g01450 . Vifa1g03511 . . . Viun5g02319 . Vivi2g05912 . . .
Vvi19g1037 . . . . . . . . . . . . . . . . . . . . Arst7g02692 . . . . . . . . . . . . . . . . . . . . Gma15g02348 . . . . . . . . . . . . . . . . . . Lapu5g01166 . Lasa1g04759 . . . . . . . . . . . . . Mepo6g02840 . Mesa5g01732 . . . . . . . Phco10g00648 . . . . . Pste3g02077 . Pte17g00273 . . . . . Pvu5g0653 . . . . . . . . . . . . . . . . . . . . . . . . . Vivi2g05913 . . .
Vvi19g1038 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1039 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma15g02349 . . . . . . . . . . . . . . . . . . . . Lasa1g04752 . . . . . . . . . . . . . . . . . . . . . . . Phco10g00656 . . . . . . . . . . . . . Pvu5g0661 . . . . . . . . . . . . . . . . . . . . . Vimu4g01757 . . . Vivi2g05920 . . .
   
Previous Page 2776 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1030 Chr19 14613380 14617833 +
Adu Adu07g02229 Chr07 73806204 73810211 +
Arst Arst7g02847 Chr7 72657809 72661822 +
Lal Lal20g0407 Chr20 3268970 3272357 +
Lasa Lasa1g04767 Chr1 779779042 779781330 -
Mepo Mepo6g02831 Chr6 39151305 39155824 +
Mesa Mesa5g01747 Chr5 26795303 26799192 -
Phco Phco10g00643 Chr10 7405531 7408774 +
Pste Pste3g02071 Chr3 14287200 14290965 +
Pte Pte15g01603 Chr15 13699867 13704081 +
Pumo Pumo4g03057 Chr4 59527518 59531388 +
Pvu Pvu5g0646 Chr5 8930802 8934597 +
Rops Rops7g01556 Chr7 23262170 23266499 -
Seca Seca4g06510 Chr4 131192660 131194866 -
Trre Trre11g02815 Chr11 37219271 37222335 -
Vian Vian11g01453 Chr11 24423481 24427831 -
Vifa Vifa1g08388 Chr1 1309629219 1309631413 +
Viun Viun5g02311 Chr5 31039722 31043374 -
Vvi Vvi19g1031 Chr19 14642844 14652148 +
Acco Acco01g3141 Chr01 48908216 48913080 +
Accr Accr1g02787 Chr1 64797604 64798989 +
Adu Adu07g02230 Chr07 73902052 73905988 +
Aed Aed1g0433 Chr1 6048224 6051868 +
Aev Aev10g1194 Chr10 15665042 15667661 +
Ahy Ahy18g1652 Chr18 41265998 41268785 -
Aip Aip08g01825 Chr08 41275570 41280218 -
Alju Alju02g0902 Chr02 6741087 6742484 -
Amo Amo18g2030 Chr18 49511309 49514234 -
Apr Apr2g0536 Chr2 6176543 6180058 -
Arst Arst7g02849 Chr7 72753569 72756319 +
Bach Bach13g00675 Chr13 12249779 12252566 +
Bisa Bisa12g0398 Chr12 5635695 5645674 +
Bva Bva09g01018 Chr09 5184747 5188280 -
Bva Bva09g01018 Chr09 5184747 5188280 -
Cca Cca10g01258 Chr10 16792766 16796336 -
Dere Dere08g0251 Chr08 4574709 4576634 +
Dod Dod10g0805 Chr10 23499208 23504120 +
Enph Enph3g0847 Chr3 29770149 29773496 +
Glsi Glsi14g0869 Chr14 10232607 10235309 -
Lal Lal20g0408 Chr20 3273985 3277997 +
Lasa Lasa1g04766 Chr1 779725195 779728712 -
Lele Lele09g0556 Chr09 4206477 4211633 +
Lele Lele10g0512 Chr10 3712337 3713675 +
Lele Lele11g0564 Chr11 5596785 5598150 +
Lele Lele12g0768 Chr12 15723668 15729123 -
Lja Lja3g3849 Chr3 75756344 75759993 -
Mepo Mepo6g02833 Chr6 39205974 39211120 +
Mesa Mesa5g01746 Chr5 26687520 26692010 -
Mibi Mibi01g0798 Chr01 7841886 7843612 -
Phco Phco10g00644 Chr10 7413823 7417494 +
Prci Prci7g1660 Chr7 32164753 32168646 +
Pste Pste3g02073 Chr3 14306953 14312513 +
Pte Pte15g01604 Chr15 13730574 13734264 +
Pumo Pumo4g03058 Chr4 59543454 59547517 +
Pvu Pvu5g0647 Chr5 8953751 8957018 +
Rops Rops7g01554 Chr7 23239973 23243669 -
Seca Seca4g06508 Chr4 131137436 131141513 -
Ssu Ssu8g1324 Chr8 24691131 24694219 -
Trre Trre11g02810 Chr11 37147695 37151544 -
Vian Vian11g01452 Chr11 24418787 24421233 -
Vifa Vifa1g08390 Chr1 1309860382 1309863482 +
Vvi Vvi19g1032 Chr19 14661830 14666329 +
Vvi Vvi19g1033 Chr19 14673966 14674295 -
Vvi Vvi19g1034 Chr19 14717503 14720642 +
Gma Gma08g01644 Chr08 14626473 14631285 -
Gso Gso8g1482 Chr8 14414013 14418825 -
Vvi Vvi19g1035 Chr19 14894778 14896777 +
Acco Acco01g3142 Chr01 48939030 48953667 +
Accr Accr1g02790 Chr1 64847699 64850312 +
Adu Adu07g02231 Chr07 73971455 73977586 +
Alju Alju02g0891 Chr02 6650508 6652675 -
Arst Arst7g02690 Chr7 69270955 69301558 -
Bach Bach13g00678 Chr13 12322623 12328402 +
Bisa Bisa12g0399 Chr12 5657399 5659541 +
Dere Dere08g0252 Chr08 4581897 4587012 +
Glsi Glsi14g0871 Chr14 10245197 10256283 -
Gma Gma15g02343 Chr15 49759157 49767920 +
Lasa Lasa1g04762 Chr1 779490699 779491544 -
Mesa Mesa5g01737 Chr5 26458083 26461426 -
Mibi Mibi01g0786 Chr01 7701037 7704213 -
Phco Phco10g00645 Chr10 7429848 7430631 +
Prci Prci7g1662 Chr7 32168924 32171652 +
Pste Pste3g02075 Chr3 14329162 14334088 +
Pte Pte17g00270 Chr17 3694470 3696721 +
Pte Pte15g01605 Chr15 13740129 13742737 +
Pumo Pumo4g03061 Chr4 59802639 59806211 +
Pvu Pvu5g0651 Chr5 9098675 9102875 -
Pvu Pvu11g1671 Chr11 42455014 42458799 +
Rops Rops7g01548 Chr7 23121190 23125292 -
Vian Vian11g01516 Chr11 25253636 25267969 -
Vifa Vifa1g03517 Chr1 545845242 545847779 -
Vimu Vimu5g00596 Chr5 6528652 6531314 +
Viun Viun5g02318 Chr5 31479953 31483820 +
Vivi Vivi2g05911 Chr2 189724842 189729933 +
Vvi Vvi19g1036 Chr19 14902448 14923796 +
Acco Acco01g3152 Chr01 49049812 49050882 +
Alju Alju02g0888 Chr02 6625669 6628549 -
Arst Arst7g02691 Chr7 69271137 69301558 -
Bisa Bisa12g0404 Chr12 5721048 5721913 +
Dere Dere08g0259 Chr08 4699471 4701928 +
Glsi Glsi14g0886 Chr14 10404095 10408030 +
Gma Gma15g02344 Chr15 49768647 49770108 +
Lapu Lapu5g01188 Chr5 24018850 24022779 -
Lasa Lasa1g04760 Chr1 779442325 779450989 -
Mepo Mepo6g02838 Chr6 39293045 39300782 +
Mesa Mesa5g01734 Chr5 26400154 26403844 -
Mibi Mibi01g0781 Chr01 7584095 7587635 -
Phco Phco10g00647 Chr10 7453103 7455764 -
Prci Prci7g1666 Chr7 32193641 32196429 +
Pumo Pumo4g03062 Chr4 59815140 59821990 +
Pvu Pvu5g0652 Chr5 9131000 9135126 -
Pvu Pvu11g1670 Chr11 42417760 42422872 +
Rops Rops7g01547 Chr7 23095217 23099363 -
Vian Vian11g01450 Chr11 24397207 24399979 -
Vifa Vifa1g03511 Chr1 545303580 545306072 -
Viun Viun5g02319 Chr5 31517027 31520397 +
Vivi Vivi2g05912 Chr2 189734245 189736958 -
Vvi Vvi19g1037 Chr19 14954775 14957654 +
Arst Arst7g02692 Chr7 69271137 69282612 -
Gma Gma15g02348 Chr15 49866599 49873253 -
Lapu Lapu5g01166 Chr5 23668909 23674223 -
Lasa Lasa1g04759 Chr1 779414562 779417305 -
Mepo Mepo6g02840 Chr6 39322550 39324502 +
Mesa Mesa5g01732 Chr5 26340460 26344271 -
Phco Phco10g00648 Chr10 7506753 7514610 +
Pste Pste3g02077 Chr3 14334265 14335770 +
Pte Pte17g00273 Chr17 3764622 3767689 -
Pvu Pvu5g0653 Chr5 9167855 9170901 +
Vivi Vivi2g05913 Chr2 189747268 189750120 +
Vvi Vvi19g1038 Chr19 14961012 14961875 -
Vvi Vvi19g1039 Chr19 15020746 15025532 -
Gma Gma15g02349 Chr15 49874002 49879730 -
Lasa Lasa1g04752 Chr1 778559849 778560061 -
Phco Phco10g00656 Chr10 7639162 7641642 -
Pvu Pvu5g0661 Chr5 9518052 9520743 -
Vimu Vimu4g01757 Chr4 19169434 19172469 -
Vivi Vivi2g05920 Chr2 189883032 189885007 +