Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0940 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g01548 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal4g1737 . . . . . . . Mtr2g2422 . . . . Phco9g01848 . . . . . Pste1g04078 . . . . . . . Pvu11g1721 . . . . . . . . . . Tpr7g3376 . . . Tsu02g04117 . . . . . . . . . . . . .
Vvi19g0941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g1886 . . . . . . . Mtr8g1310 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto7g0103 . . . . . . . . . . . . . . . . . .
Vvi19g0942 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g01547 Car01g01907 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal4g1739 . . . . . . . Mtr2g2421 . . . . . . . . . . . . . . . . . . Pvu11g1720 . . . . . Spst11g00528 . . . . Tpr7g3377 . . . Tsu02g04116 . . . . . . Vimu5g00476 . . . . . .
Vvi19g0943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0944 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0945 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0946 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0948 . . . . Adu01g00239 . . . . . . . . . . . . . . . Arst1g00333 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu6g02541 . . . . . . . . . . . . . . . Mepo3g04711 . . . . . . . . . Phco11g01918 . . . . . Pste7g01383 . . . . . Pumo1g00841 . Pvu6g0535 . Rops11g02684 . Seca6g02976 . Spst6g01962 . . . . . . . Trre5g01216 . . . Vian6g00434 . . . Vimu2g02442 . Viun6g00862 . . . . .
Vvi19g0949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g0940 Chr19 11491857 11505034 -
Bva Bva07g01548 Chr07 15106749 15110394 +
Mal Mal4g1737 Chr4 31121651 31124854 -
Mtr Mtr2g2422 Chr2 36485125 36489512 +
Phco Phco9g01848 Chr9 42932330 42940766 +
Pste Pste1g04078 Chr1 23789128 23797028 +
Pvu Pvu11g1721 Chr11 43526944 43531002 +
Tpr Tpr7g3376 Chr7 41940630 41945309 -
Tsu Tsu02g04117 Chr02 48072297 48085083 +
Vvi Vvi19g0941 Chr19 11542512 11543471 -
Mal Mal5g1886 Chr5 39914797 39925700 -
Mtr Mtr8g1310 Chr8 16086511 16090554 -
Sto Sto7g0103 Chr7 769982 770413 +
Vvi Vvi19g0942 Chr19 11550491 11553113 -
Bva Bva07g01547 Chr07 15095187 15098264 +
Car Car01g01907 Chr01 43558837 43592815 +
Mal Mal4g1739 Chr4 31210679 31214748 -
Mtr Mtr2g2421 Chr2 36443156 36447181 +
Pvu Pvu11g1720 Chr11 43523266 43524745 +
Spst Spst11g00528 Chr11 27232953 27235439 -
Tpr Tpr7g3377 Chr7 41949985 41964226 -
Tsu Tsu02g04116 Chr02 48031681 48063769 +
Vimu Vimu5g00476 Chr5 4799808 4819152 -
Vvi Vvi19g0943 Chr19 11667992 11668535 -
Vvi Vvi19g0944 Chr19 11673061 11675030 -
Vvi Vvi19g0945 Chr19 11678277 11689888 -
Vvi Vvi19g0946 Chr19 11696650 11698110 -
Vvi Vvi19g0947 Chr19 11722555 11723508 +
Vvi Vvi19g0948 Chr19 11785753 11793341 -
Adu Adu01g00239 Chr01 3097293 3100602 +
Arst Arst1g00333 Chr1 3098662 3104992 +
Lapu Lapu6g02541 Chr6 25403785 25407717 -
Mepo Mepo3g04711 Chr3 58631177 58632871 -
Phco Phco11g01918 Chr11 15604611 15608828 -
Pste Pste7g01383 Chr7 12526985 12531179 +
Pumo Pumo1g00841 Chr1 12861638 12865574 -
Pvu Pvu6g0535 Chr6 16606733 16611282 +
Rops Rops11g02684 Chr11 46267794 46288041 -
Seca Seca6g02976 Chr6 95748180 95751985 -
Spst Spst6g01962 Chr6 19181592 19185552 -
Trre Trre5g01216 Chr5 8580760 8584519 +
Vian Vian6g00434 Chr6 18306264 18310519 +
Vimu Vimu2g02442 Chr2 20204588 20207625 -
Viun Viun6g00862 Chr6 18409588 18414275 +
Vvi Vvi19g0949 Chr19 11827806 11830931 -