Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0910 . . . . Adu01g00258 . Aed1g2740 . Aev07g0067 . Ahy17g0143 . Aip07g00087 . . . . . . . Arst1g00361 . Bach12g01387 . . . . . . . Cca10g01964 . . . Dod08g0083 . . . . . . Gma18g00742 . Gma14g00148 . . . . . . . Lal3g1226 Lal5g0439 . . . . . . . Lapu6g02526 . Lasa5g01140 . . . . . . . . . . . . . Mepo3g04724 . . . . . . . . . Phco11g01897 . . . Psa5g5306 . Pste7g01395 . Pte9g01175 . . . Pumo1g00830 . Pvu6g0558 . Rops11g02650 . . . Spst6g01948 . Ssu8g1922 . . . . . . . . . Vian6g00450 . Vifa1g03415 . Vimu2g02424 . Viun6g00902 . Vivi3g05391 . Vra5g2680 .
Vvi19g0911 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0912 . . . . . . Aed1g2741 . . . . . . . . . . . . . . . . . . . . . . . Cca10g01963 . . . . . . . . . . . . . . . . . . . . Lal3g1227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa5g5305 . . . . . . . . . . . . . . . . . Ssu8g1921 . . . . . . . . . . . . . . . . . . . Vra5g2679 .
Vvi19g0913 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0914 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0916 . . . . . . . . . . . . . . . . . . . Apr9g1816 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0917 . . . . . . Aed1g2747 . . . . . . . . . . . . . . . . . . . . . . . Cca10g01957 . . . . . . . . . . . . . . . . . . . . . Lal5g0443 . . . . . . . . . . . . . . . . . . . . . . . Mepo5g02507 . Mesa9g00210 . . . . . . . Phco10g00070 . . . Psa5g5297 . Pste3g01230 . . . . . Pumo11g00014 . Pvu5g0068 . Rops7g02041 . Seca4g07779 . Spst5g01922 . Ssu8g1916 . . . . . Trre5g00139 . . . Vian11g01193 . Vifa2g00076 . Vimu4g02276 . Viun1g00124 . Vivi3g07671 . Vra5g2671 .
Vvi19g0918 . . . . Adu10g02778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco10g00105 . . . . . . . . . . . . . Pvu5g0111 . . . . . . . . . . . . . . . . . . . . . Vimu4g02236 . . . . . . .
Vvi19g0919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vra Vra5g2679 Chr5 33454436 33458931 +
Adu Adu10g02778 Chr10 104320297 104338555 +
Phco Phco10g00105 Chr10 869093 876294 -
Pvu Pvu5g0111 Chr5 904542 912610 -
Vimu Vimu4g02236 Chr4 24426081 24433018 +
Apr Apr9g1816 Chr9 27023419 27027057 -
Adu Adu01g00258 Chr01 3320436 3326412 +
Arst Arst1g00361 Chr1 3324497 3330358 +
Bach Bach12g01387 Chr12 9844586 9849943 -
Gma Gma18g00742 Chr18 7883446 7888755 -
Gma Gma14g00148 Chr14 1188585 1194130 -
Lapu Lapu6g02526 Chr6 25228886 25234440 -
Lapu Lapu6g02526 Chr6 25228886 25234440 -
Lasa Lasa5g01140 Chr5 310404917 310409829 +
Mepo Mepo3g04724 Chr3 58806192 58813158 +
Phco Phco11g01897 Chr11 15294299 15299301 -
Pste Pste7g01395 Chr7 12709340 12715958 +
Pte Pte9g01175 Chr9 33390887 33397119 +
Pumo Pumo1g00830 Chr1 12602921 12608959 -
Pvu Pvu6g0558 Chr6 16845731 16851077 +
Rops Rops11g02650 Chr11 45363728 45370156 -
Spst Spst6g01948 Chr6 19031555 19036413 -
Vian Vian6g00450 Chr6 18801935 18807001 +
Vifa Vifa1g03415 Chr1 531284963 531286883 +
Vifa Vifa1g03415 Chr1 531284963 531286883 +
Vimu Vimu2g02424 Chr2 19910450 19915583 -
Viun Viun6g00902 Chr6 18762533 18767196 +
Vivi Vivi3g05391 Chr3 110479705 110485250 -
Apr Apr9g1816 Chr9 27023419 27027057 -
Vvi Vvi19g0910 Chr19 10665195 10669055 -
Adu Adu01g00258 Chr01 3320436 3326412 +
Aed Aed1g2740 Chr1 22714618 22719310 -
Aev Aev07g0067 Chr07 410207 412557 +
Ahy Ahy17g0143 Chr17 1555352 1560200 +
Aip Aip07g00087 Chr07 688838 692720 +
Arst Arst1g00361 Chr1 3324497 3330358 +
Bach Bach12g01387 Chr12 9844586 9849943 -
Cca Cca10g01964 Chr10 37494219 37499204 +
Dod Dod08g0083 Chr08 899045 901398 +
Gma Gma18g00742 Chr18 7883446 7888755 -
Gma Gma14g00148 Chr14 1188585 1194130 -
Lal Lal3g1226 Chr3 17771119 17775712 -
Lal Lal5g0439 Chr5 4390777 4394845 -
Lapu Lapu6g02526 Chr6 25228886 25234440 -
Lasa Lasa5g01140 Chr5 310404917 310409829 +
Mepo Mepo3g04724 Chr3 58806192 58813158 +
Phco Phco11g01897 Chr11 15294299 15299301 -
Psa Psa5g5306 Chr5 463751659 463755833 +
Pste Pste7g01395 Chr7 12709340 12715958 +
Pte Pte9g01175 Chr9 33390887 33397119 +
Pumo Pumo1g00830 Chr1 12602921 12608959 -
Pvu Pvu6g0558 Chr6 16845731 16851077 +
Rops Rops11g02650 Chr11 45363728 45370156 -
Spst Spst6g01948 Chr6 19031555 19036413 -
Ssu Ssu8g1922 Chr8 50078340 50081972 +
Vian Vian6g00450 Chr6 18801935 18807001 +
Vifa Vifa1g03415 Chr1 531284963 531286883 +
Vimu Vimu2g02424 Chr2 19910450 19915583 -
Viun Viun6g00902 Chr6 18762533 18767196 +
Vivi Vivi3g05391 Chr3 110479705 110485250 -
Vra Vra5g2680 Chr5 33473411 33478083 +
Vvi Vvi19g0911 Chr19 10670166 10675472 +
Vvi Vvi19g0912 Chr19 10676012 10679647 -
Aed Aed1g2741 Chr1 22735130 22738798 -
Cca Cca10g01963 Chr10 37461096 37465346 +
Lal Lal3g1227 Chr3 17782358 17786008 -
Psa Psa5g5305 Chr5 463594317 463597982 +
Ssu Ssu8g1921 Chr8 50037405 50038172 +
Vra Vra5g2679 Chr5 33454436 33458931 +
Vvi Vvi19g0913 Chr19 10693213 10693713 +
Vvi Vvi19g0914 Chr19 10694872 10702230 +
Vvi Vvi19g0915 Chr19 10712939 10725826 +
Vvi Vvi19g0916 Chr19 10747971 10749212 +
Apr Apr9g1816 Chr9 27023419 27027057 -
Vvi Vvi19g0917 Chr19 10786080 10829976 -
Aed Aed1g2747 Chr1 22771969 22782688 +
Cca Cca10g01957 Chr10 37336165 37354766 -
Lal Lal5g0443 Chr5 4447518 4462672 +
Mepo Mepo5g02507 Chr5 30330066 30343075 -
Mesa Mesa9g00210 Chr9 4685604 4696943 -
Phco Phco10g00070 Chr10 576635 587981 +
Psa Psa5g5297 Chr5 463193884 463206513 -
Pste Pste3g01230 Chr3 7812922 7829005 -
Pumo Pumo11g00014 Chr11 1128962 1141915 -
Pvu Pvu5g0068 Chr5 526072 538219 +
Rops Rops7g02041 Chr7 34021646 34035782 +
Seca Seca4g07779 Chr4 179089539 179118168 -
Spst Spst5g01922 Chr5 54834392 54844715 +
Ssu Ssu8g1916 Chr8 49895226 49916326 -
Trre Trre5g00139 Chr5 795184 804421 -
Vian Vian11g01193 Chr11 19430488 19442429 -
Vifa Vifa2g00076 Chr2 6962152 6977997 +
Vimu Vimu4g02276 Chr4 24758055 24758992 -
Viun Viun1g00124 Chr1 865379 877564 +
Vivi Vivi3g07671 Chr3 213479765 213489740 -
Vra Vra5g2671 Chr5 33372520 33385880 -
Vvi Vvi19g0918 Chr19 10837858 10842018 +
Adu Adu10g02778 Chr10 104320297 104338555 +
Phco Phco10g00105 Chr10 869093 876294 -
Pvu Pvu5g0111 Chr5 904542 912610 -
Vimu Vimu4g02236 Chr4 24426081 24433018 +
Vvi Vvi19g0919 Chr19 10897106 10897651 -