Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0201 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0202 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g01680 Bva11g00137 . . Cca06g00057 . . . . . . . . . . . . . . . . . . Lal22g1056 . . . . . . . . . . . . . . . . . . . . . . . . Mal1g4550 . . . . . . . Mtr1g1196 . . . . . . . . Psa7g4075 . . . . . . . . . . . . . . . . Ssu2g1013 . . . Tpr1g2815 . . . Tsu01g01317 . . . . . . . . . . . . .
Vvi1g0203 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g01706 Bva11g00150 . . Cca06g00058 . . . . . . . . . . . . . . . . . . Lal22g1051 . . . . . . . . . . . . . . . . . . . . . . . . Mal1g4551 . . . . . . . Mtr1g1195 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1014 . . . Tpr1g2816 . . . Tsu01g01315 . . . . . . . . . . . . .
Vvi1g0204 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0205 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g00879 . Car06g02144 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g4073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0206 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g00883 . . . Cca06g00061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1017 . . . . . . . . . . . . . . . . . . . . .
Vvi1g0207 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g00903 . Car06g02148 . . . . . . . . . . . . . . . . . . . . Lal22g1024 . . . . . . . . . . . . . . . . . . . . . . . . Mal1g4553 . . . . . . . Mtr1g1193 . . . . . . . . Psa7g4068 . . . . . . . . . . . . . . . . . . . . . . . . Tsu01g01309 . . . . . . . . . . . . .
Vvi1g0208 . . . . . . Aed11g1024 . . . . . . . . . . . . . . . . . . . Bva01g00920 . Car06g02152 . Cca06g00067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g4736 . . . . . . . Mtr1g1169 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1023 . . . Tpr1g2822 . . . Tsu01g01300 . . . . . . . . . . . . .
Vvi1g0209 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0201 Chr1 1786151 1789557 -
Vvi Vvi1g0202 Chr1 1798112 1813176 +
Bva Bva08g01680 Chr08 9184552 9202023 +
Bva Bva11g00137 Chr11 3647302 3662560 +
Cca Cca06g00057 Chr06 1229189 1243504 +
Lal Lal22g1056 Chr22 9312510 9350063 -
Mal Mal1g4550 Chr1 105625127 105638612 +
Mtr Mtr1g1196 Chr1 14118948 14132130 -
Psa Psa7g4075 Chr7 334768795 334783189 -
Ssu Ssu2g1013 Chr2 47878025 47901407 +
Tpr Tpr1g2815 Chr1 32310855 32322856 +
Tsu Tsu01g01317 Chr01 12472306 12485089 -
Vvi Vvi1g0203 Chr1 1819958 1823464 -
Bva Bva08g01706 Chr08 10028995 10031887 -
Bva Bva11g00150 Chr11 3767945 3772718 -
Cca Cca06g00058 Chr06 1264388 1269849 -
Lal Lal22g1051 Chr22 9286185 9289390 +
Mal Mal1g4551 Chr1 105643467 105646431 -
Mtr Mtr1g1195 Chr1 14112356 14116695 +
Ssu Ssu2g1014 Chr2 47918722 47922301 -
Tpr Tpr1g2816 Chr1 32329108 32332084 -
Tsu Tsu01g01315 Chr01 12444591 12447582 +
Vvi Vvi1g0204 Chr1 1824408 1824470 +
Vvi Vvi1g0205 Chr1 1824676 1838995 +
Bva Bva01g00879 Chr01 6284099 6290712 -
Car Car06g02144 Chr06 21879545 21884053 -
Psa Psa7g4073 Chr7 334727814 334731794 +
Vvi Vvi1g0206 Chr1 1840139 1883645 -
Bva Bva01g00883 Chr01 6304603 6328787 +
Cca Cca06g00061 Chr06 1314116 1349395 +
Ssu Ssu2g1017 Chr2 48016388 48039669 +
Vvi Vvi1g0207 Chr1 1887739 1890374 +
Bva Bva01g00903 Chr01 6602346 6606952 +
Car Car06g02148 Chr06 21903538 21907739 +
Lal Lal22g1024 Chr22 8929536 8932736 -
Mal Mal1g4553 Chr1 105808898 105815090 +
Mtr Mtr1g1193 Chr1 14077198 14080429 -
Psa Psa7g4068 Chr7 334428450 334432821 -
Tsu Tsu01g01309 Chr01 12328074 12339605 -
Vvi Vvi1g0208 Chr1 1891659 1898827 -
Aed Aed11g1024 Chr11 16054612 16071963 -
Bva Bva01g00920 Chr01 6791445 6797144 +
Car Car06g02152 Chr06 21929040 21933843 +
Cca Cca06g00067 Chr06 1620176 1657102 +
Mal Mal1g4736 Chr1 113201798 113211021 +
Mtr Mtr1g1169 Chr1 13397600 13410543 -
Ssu Ssu2g1023 Chr2 48247086 48270683 +
Tpr Tpr1g2822 Chr1 32432841 32449276 +
Tsu Tsu01g01300 Chr01 12221054 12231793 -
Vvi Vvi1g0209 Chr1 1903131 1917782 -
Vvi Vvi1g0210 Chr1 1923817 1927783 +