Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g2238 . . . . Aev08g1569 . . . . . . . . . . . . . . Dod09g0565 . . . . . . . . . . . . . Lasa7g00747 . . . . Lja3g4743 . . . . . . . . . . . . . Spst11g00244 . . . . . . . Vimu5g00059 . . .
Pvu11g2239 . . . . Aev08g1570 . . . . . . . . . . . . Cca04g01964 . Dod09g0563 . . . . . . . . . . . . . Lasa7g00749 . . . . . . . . . . . . . . Pste1g04219 Pumo10g02727 . . Spst11g00245 . . . . . Vian5g00032 . Vimu5g00058 Viun11g00022 . .
Pvu11g2240 . . . . . . . . . . . . . . . . . Cca04g01965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pumo10g02728 Rops3g02806 Seca4g10001 Spst11g00247 . . . . . Vian5g00030 . Vimu5g00054 Viun11g00021 . .
Pvu11g2241 . . . . . . . . . . . . . . . . . Cca04g01967 . . . . . . . . . . . . . . . Lasa7g00752 . . . . . . . . . . . . . . . Pumo10g02730 Rops3g02807 Seca4g10002 Spst11g00248 . . . . . Vian5g00024 . Vimu5g00053 Viun11g00020 . .
Pvu11g2242 . . . . Aev08g1571 . . . . . . . . . . . . Cca04g01968 . Dod09g0562 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pumo10g02731 Rops3g02809 Seca4g10005 Spst11g00249 . . . . . Vian5g00022 . . Viun11g00018 . .
Pvu11g2243 . . . . Aev08g1572 . . . . . . . . . . Bva07g00162 . Cca04g01969 . . . . . . . . . . . . . . . Lasa7g00757 . . . . . . . . . . . . . . Pste1g04218 Pumo10g02732 . . Spst11g00250 . . . . . Vian5g00021 . . Viun11g00016 . .
Pvu11g2244 . . . . Aev08g1573 . . . . . . . . Bach9g01840 . Bva07g00155 . . . . . . . . . . . . . . . . . Lasa7g00759 . . . . . . . . . . . . . . . . . . Spst11g00251 . . . . . . . . . . .
Pvu11g2245 . . . . Aev08g1438 . . . . . . . . Bach9g01839 . Bva07g00154 . . . . . . . . . . . . . . . . . Lasa7g00760 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2246 . . . . Aev08g1439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g00762 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2247 . . . . Aev08g1441 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g00766 . . . . . . . . . . . . . . Pste1g04210 . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g2238 Chr11 50005901 50007748 -
Aev Aev08g1569 Chr08 11355040 11358599 -
Dod Dod09g0565 Chr09 9037115 9037673 +
Lasa Lasa7g00747 Chr7 52663411 52664856 -
Lja Lja3g4743 Chr3 89474961 89476725 -
Spst Spst11g00244 Chr11 7916934 7922437 -
Vimu Vimu5g00059 Chr5 485873 487390 +
Pvu Pvu11g2239 Chr11 50112467 50116453 +
Aev Aev08g1570 Chr08 11365605 11371346 +
Cca Cca04g01964 Chr04 38239921 38244291 +
Dod Dod09g0563 Chr09 8994722 8999710 -
Lasa Lasa7g00749 Chr7 53873759 53875125 +
Pste Pste1g04219 Chr1 26557376 26561386 -
Pumo Pumo10g02727 Chr10 51017997 51021883 +
Spst Spst11g00245 Chr11 8126256 8127968 +
Vian Vian5g00032 Chr5 611130 613349 -
Vimu Vimu5g00058 Chr5 480986 483170 -
Viun Viun11g00022 Chr11 184538 188349 -
Pvu Pvu11g2240 Chr11 50117514 50119873 -
Cca Cca04g01965 Chr04 38260642 38264931 +
Pumo Pumo10g02728 Chr10 51022077 51023543 -
Rops Rops3g02806 Chr3 59389693 59392226 +
Seca Seca4g10001 Chr4 233003075 233005506 +
Spst Spst11g00247 Chr11 8131929 8133572 -
Vian Vian5g00030 Chr5 592059 592778 +
Vimu Vimu5g00054 Chr5 463340 464500 +
Viun Viun11g00021 Chr11 179733 183776 +
Pvu Pvu11g2241 Chr11 50122884 50125029 +
Cca Cca04g01967 Chr04 38280286 38282122 +
Lasa Lasa7g00752 Chr7 55048067 55049751 -
Pumo Pumo10g02730 Chr10 51029127 51031401 +
Rops Rops3g02807 Chr3 59415292 59420308 +
Seca Seca4g10002 Chr4 233015175 233016698 +
Spst Spst11g00248 Chr11 8138931 8140826 +
Vian Vian5g00024 Chr5 318089 319612 +
Vimu Vimu5g00053 Chr5 456998 457687 -
Viun Viun11g00020 Chr11 179733 183776 +
Pvu Pvu11g2242 Chr11 50126054 50130876 -
Aev Aev08g1571 Chr08 11379463 11385611 -
Cca Cca04g01968 Chr04 38282154 38291769 -
Dod Dod09g0562 Chr09 8984470 8990981 +
Pumo Pumo10g02731 Chr10 51032531 51039744 -
Rops Rops3g02809 Chr3 59453093 59458544 +
Seca Seca4g10005 Chr4 233030085 233031779 +
Spst Spst11g00249 Chr11 8141155 8148905 -
Vian Vian5g00022 Chr5 307980 313069 +
Viun Viun11g00018 Chr11 169816 172039 +
Pvu Pvu11g2243 Chr11 50132400 50137832 -
Aev Aev08g1572 Chr08 11389150 11401774 -
Bva Bva07g00162 Chr07 2794119 2801915 +
Cca Cca04g01969 Chr04 38297172 38303388 -
Lasa Lasa7g00757 Chr7 55918582 55926366 +
Pste Pste1g04218 Chr1 26533078 26541382 +
Pumo Pumo10g02732 Chr10 51041146 51047117 -
Spst Spst11g00250 Chr11 8149906 8155163 -
Vian Vian5g00021 Chr5 301587 306629 +
Viun Viun11g00016 Chr11 161836 166845 +
Pvu Pvu11g2244 Chr11 50142442 50154147 +
Aev Aev08g1573 Chr08 11407686 11427174 +
Bach Bach9g01840 Chr9 25664538 25681255 -
Bva Bva07g00155 Chr07 2710210 2724547 -
Lasa Lasa7g00759 Chr7 56266546 56280739 +
Spst Spst11g00251 Chr11 8175145 8194453 +
Pvu Pvu11g2245 Chr11 50155120 50159314 -
Aev Aev08g1438 Chr08 9991051 9997310 -
Bach Bach9g01839 Chr9 25639464 25644005 +
Bva Bva07g00154 Chr07 2698603 2702943 +
Lasa Lasa7g00760 Chr7 56375919 56380118 -
Pvu Pvu11g2246 Chr11 50160731 50171829 -
Aev Aev08g1439 Chr08 10000487 10024981 -
Lasa Lasa7g00762 Chr7 56490000 56490613 -
Pvu Pvu11g2247 Chr11 50176173 50185138 +
Aev Aev08g1441 Chr08 10031203 10044252 +
Lasa Lasa7g00766 Chr7 56894413 56906707 +
Pste Pste1g04210 Chr1 26432695 26446078 +