Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g2208 Acco08g2098 Accr1g02537 . . . . . . Alju10g2061 . . . . . Bisa02g2681 . . . Dere07g1971 . Enph8g1293 Glsi04g2024 . . . . . . . . . . . . Lele29g1416 Lele30g0148 Lele31g0166 Lele32g1240 . . . . Mibi07g1926 . . . Prci6g2618 . . . . . . . Sto4g2158 . . . . . . . . .
Pvu11g2209 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2210 . . . . Aev08g1512 . . . . . . . . . . . . . . . . . . . . . . Lal2g0870 . Lan7g0889 . . . Lasa4g01116 . . . . . . Mepo1g03544 Mesa29g04066 . Mtr8g1145 . . . . . . . . . . . . Trre15g01399 . . . . . Vivi7g04692 .
Pvu11g2211 . . . . . . . . . . . . . . . . . Cca04g01919 . . . . Gma13g01783 . . . . . . . . . . . . . . . . . . . . . . Phco9g02242 . . Pste1g04269 Pumo10g02646 Rops3g02728 . Spst11g00208 . . . . . . . . Viun11g00068 Vivi5g01115 .
Pvu11g2212 . . . . . . . . . . . . . Bach9g01137 . Bva07g01292 Car07g02589 Cca04g01920 . Dod09g0613 . . . . . . . . Lal9g0689 . Lan8g1262 . . . . . . . Lja3g4691 Mal5g1685 . . . . . Phco9g02243 . . Pste1g04268 Pumo10g02648 Rops3g02731 Seca4g09908 . Ssu2g0066 . Tpr7g1706 . Tsu08g01300 Vian5g00063 . Vimu5g00095 Viun11g00067 . Vra2g1675
Pvu11g2213 . . . . . . . . . . . . . . . . . Cca04g01921 . Dod09g0612 . . . . . Gso11g2339 . . . . . . . . . . . . . . . . . . . Phco9g02244 . . Pste1g04267 Pumo10g02650 Rops3g02732 Seca4g09909 Spst11g00209 Ssu2g0067 . . . . Vian5g00062 . Vimu5g00094 Viun11g00066 . Vra2g1674
Pvu11g2214 . . . . . . . . . . . . . . . . Car07g02593 . . . . . . . . . . . . . . . . . . . . . . Mal5g1682 . . . . . . . . . . . . . . . Tpr7g1708 . . . . . . . .
Pvu11g2215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2216 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2217 . . . . . . . . . . . . . . . . . . . . . . . . . . Lal1g0715 . . . . Lan13g0714 . . . . . . . . . . . . . . . . . . . . . . . . . Tsu08g01299 . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g2208 Chr11 49712718 49713686 -
Acco Acco08g2098 Chr08 35917399 35917926 +
Accr Accr1g02537 Chr1 61516663 61517199 -
Alju Alju10g2061 Chr10 40078718 40079434 +
Bisa Bisa02g2681 Chr02 68057687 68058199 +
Dere Dere07g1971 Chr07 32850422 32850937 +
Enph Enph8g1293 Chr8 21290968 21291492 -
Glsi Glsi04g2024 Chr04 70525086 70525577 +
Lele Lele29g1416 Chr29 20898130 20898657 +
Lele Lele30g0148 Chr30 1477340 1478026 -
Lele Lele31g0166 Chr31 1591093 1591957 -
Lele Lele32g1240 Chr32 13386315 13387191 +
Mibi Mibi07g1926 Chr07 40597396 40598603 +
Prci Prci6g2618 Chr6 38117677 38118660 +
Sto Sto4g2158 Chr4 22990418 22990933 -
Pvu Pvu11g2209 Chr11 49716318 49723076 -
Pvu Pvu11g2210 Chr11 49723265 49724188 -
Aev Aev08g1512 Chr08 10709197 10709940 +
Lal Lal2g0870 Chr2 5638778 5640667 -
Lan Lan7g0889 Chr7 8050833 8051872 -
Lasa Lasa4g01116 Chr4 74941707 74942501 -
Mepo Mepo1g03544 Chr1 41186933 41188216 +
Mesa Mesa29g04066 Chr29 66735370 66736137 +
Mtr Mtr8g1145 Chr8 13948830 13950024 -
Trre Trre15g01399 Chr15 10864885 10865643 -
Vivi Vivi7g04692 Chr7 119691892 119692931 -
Pvu Pvu11g2211 Chr11 49726183 49727999 +
Cca Cca04g01919 Chr04 37235889 37237817 +
Gma Gma13g01783 Chr13 33155202 33157598 -
Phco Phco9g02242 Chr9 47773775 47775449 +
Pste Pste1g04269 Chr1 27218639 27230053 -
Pumo Pumo10g02646 Chr10 49103991 49127563 +
Rops Rops3g02728 Chr3 57928923 57943523 -
Spst Spst11g00208 Chr11 7571193 7572916 -
Viun Viun11g00068 Chr11 384509 386901 +
Vivi Vivi5g01115 Chr5 27918386 27923789 +
Pvu Pvu11g2212 Chr11 49729050 49730097 +
Bach Bach9g01137 Chr9 8859675 8860548 -
Bva Bva07g01292 Chr07 13644363 13645465 +
Car Car07g02589 Chr07 49410980 49418424 +
Cca Cca04g01920 Chr04 37242686 37247332 -
Dod Dod09g0613 Chr09 10399637 10400703 -
Lal Lal9g0689 Chr9 4767797 4769380 +
Lan Lan8g1262 Chr8 18986302 18987733 -
Lja Lja3g4691 Chr3 88956846 88958173 +
Mal Mal5g1685 Chr5 33179306 33181259 +
Phco Phco9g02243 Chr9 47776206 47776923 -
Pste Pste1g04268 Chr1 27215851 27218491 +
Pumo Pumo10g02648 Chr10 49132790 49135136 -
Rops Rops3g02731 Chr3 57944854 57946626 -
Seca Seca4g09908 Chr4 231867771 231868546 -
Ssu Ssu2g0066 Chr2 5836887 5840550 -
Tpr Tpr7g1706 Chr7 19512796 19513981 -
Tsu Tsu08g01300 Chr08 14749879 14750994 +
Vian Vian5g00063 Chr5 1048911 1049867 +
Vimu Vimu5g00095 Chr5 716095 717039 +
Viun Viun11g00067 Chr11 384509 387141 +
Vra Vra2g1675 Chr2 24902954 24903934 +
Pvu Pvu11g2213 Chr11 49730523 49732695 -
Cca Cca04g01921 Chr04 37346861 37349489 -
Dod Dod09g0612 Chr09 10396426 10399095 +
Gso Gso11g2339 Chr11 39397393 39400214 -
Phco Phco9g02244 Chr9 47778548 47780238 -
Pste Pste1g04267 Chr1 27202570 27204580 +
Pumo Pumo10g02650 Chr10 49187924 49190327 -
Rops Rops3g02732 Chr3 58055172 58068096 +
Seca Seca4g09909 Chr4 231868922 231870252 -
Spst Spst11g00209 Chr11 7573967 7576252 -
Ssu Ssu2g0067 Chr2 5844165 5890284 -
Vian Vian5g00062 Chr5 1047036 1048040 +
Vimu Vimu5g00094 Chr5 708715 715416 +
Viun Viun11g00066 Chr11 384507 387141 +
Vra Vra2g1674 Chr2 24900018 24902492 +
Pvu Pvu11g2214 Chr11 49735662 49738596 -
Car Car07g02593 Chr07 49540745 49544391 +
Mal Mal5g1682 Chr5 33087810 33090440 -
Tpr Tpr7g1708 Chr7 19546051 19549819 +
Pvu Pvu11g2215 Chr11 49750227 49750841 +
Pvu Pvu11g2216 Chr11 49767187 49768928 +
Pvu Pvu11g2217 Chr11 49770875 49773821 +
Lal Lal1g0715 Chr1 4795703 4798991 -
Lan Lan13g0714 Chr13 6988563 6991665 -
Tsu Tsu08g01299 Chr08 14743635 14747053 +