Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1898 . . . . . . . . . . . . Arst7g01015 . . . Car07g02403 . . . . . . . . . . . . . . . . . . . . . . . Mepo1g03251 . . Mtr8g1397 . Phco9g01999 . . Pste1g01705 . . . . . . . Trre15g01642 . . . Vimu5g00808 . . .
Pvu11g1899 . . . . . . . . . . . . Arst7g01016 . . . . . . . . . . . . . . . . . . . . . . . . . . . Mepo1g03252 . . Mtr8g1396 . Phco9g02000 . . . . . . . . . . Trre15g01641 . . . Vimu5g00807 . Vivi7g04943 .
Pvu11g1900 . . . . . . . . . . . . Arst7g01017 . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g2009 Mepo1g03253 . . Mtr8g1395 . Phco9g02001 . . . . . . . Ssu2g0428 . . Trre15g01640 . . . Vimu5g00805 . Vivi7g04942 .
Pvu11g1901 . . . . . . . . . . . . Arst7g01018 . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g2008 Mepo1g03254 . . Mtr8g1394 . Phco9g02002 . . Pste1g01687 . . . . . . . Trre15g01638 . . . Vimu5g00803 . Vivi7g04941 .
Pvu11g1902 . . . . . . . . . . . . Arst7g01019 . . . . . . . . . . . . . . . . . . . . Lasa4g01317 . . . . . Mal5g2005 Mepo1g03255 . . Mtr8g1393 . Phco9g02004 . . . . . . . Ssu2g0427 . . Trre15g01637 . . . Vimu5g00802 . Vivi7g04938 .
Pvu11g1903 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa4g01318 . . . . . Mal5g2004 Mepo1g03256 . . Mtr8g1392 . Phco9g02006 . . . . . . Spst11g00399 . . . Trre15g01636 . . . Vimu5g00800 . Vivi7g04935 .
Pvu11g1904 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa4g01319 . . . . . . Mepo1g03257 . . Mtr8g1391 . Phco9g02007 . . . . . . Spst11g00398 Ssu2g0426 . . . . . . . . . .
Pvu11g1905 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02008 . . . . . . . . . . . . . . . . . .
Pvu11g1906 . . . . . . . . . . . . Arst7g01025 . . . . Cca04g01621 . . . . . . . . . . . . . . . Lasa4g01320 . . . . . . Mepo1g03258 . . Mtr8g1390 . . . . . . . Seca4g09649 Spst11g00397 . . . Trre15g01635 . Vian5g00440 Vifa4g00460 Vimu5g00795 . Vivi7g04934 .
Pvu11g1907 . . . . . . . . . . . . Arst7g01026 . . . . . . . . . . . . . . . . . . . . Lasa4g01321 . . . . . . Mepo1g03259 . . Mtr8g1389 . Phco9g02009 . . . . . . Spst11g00396 Ssu2g0425 . . . . . . Vimu5g00792 . Vivi7g04929 .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1898 Chr11 45933983 45936570 +
Arst Arst7g01015 Chr7 8160559 8162210 -
Car Car07g02403 Chr07 44025462 44028029 +
Mepo Mepo1g03251 Chr1 37445295 37448000 +
Mtr Mtr8g1397 Chr8 17373865 17377047 -
Phco Phco9g01999 Chr9 44975732 44977054 +
Pste Pste1g01705 Chr1 5236828 5238490 -
Trre Trre15g01642 Chr15 13175586 13176158 -
Vimu Vimu5g00808 Chr5 10338073 10338889 -
Pvu Pvu11g1899 Chr11 45939766 45941562 +
Arst Arst7g01016 Chr7 8178221 8179621 -
Mepo Mepo1g03252 Chr1 37463603 37466880 +
Mtr Mtr8g1396 Chr8 17324389 17326515 -
Phco Phco9g02000 Chr9 44989363 44990467 +
Trre Trre15g01641 Chr15 13154196 13156393 -
Vimu Vimu5g00807 Chr5 10332786 10333851 +
Vivi Vivi7g04943 Chr7 129882340 129888842 +
Pvu Pvu11g1900 Chr11 45949050 45950911 +
Arst Arst7g01017 Chr7 8178612 8192980 -
Mal Mal5g2009 Chr5 44959981 44963016 -
Mepo Mepo1g03253 Chr1 37474309 37478590 +
Mtr Mtr8g1395 Chr8 17307307 17311009 -
Phco Phco9g02001 Chr9 44997565 44999024 +
Ssu Ssu2g0428 Chr2 25041634 25042190 -
Trre Trre15g01640 Chr15 13149449 13151446 -
Vimu Vimu5g00805 Chr5 10317633 10318754 -
Vivi Vivi7g04942 Chr7 129882318 129888842 +
Pvu Pvu11g1901 Chr11 45955873 45957712 +
Arst Arst7g01018 Chr7 8191818 8192978 -
Mal Mal5g2008 Chr5 44839294 44841540 -
Mepo Mepo1g03254 Chr1 37516124 37520096 +
Mtr Mtr8g1394 Chr8 17298769 17302064 -
Phco Phco9g02002 Chr9 45001773 45002600 +
Pste Pste1g01687 Chr1 5201922 5203401 -
Trre Trre15g01638 Chr15 13106436 13107849 -
Vimu Vimu5g00803 Chr5 10286370 10286912 +
Vivi Vivi7g04941 Chr7 129820702 129823397 -
Pvu Pvu11g1902 Chr11 45977324 45979508 -
Arst Arst7g01019 Chr7 8202490 8203692 -
Lasa Lasa4g01317 Chr4 122198025 122198891 -
Mal Mal5g2005 Chr5 44573321 44575240 -
Mepo Mepo1g03255 Chr1 37520883 37524939 +
Mtr Mtr8g1393 Chr8 17277697 17281388 -
Phco Phco9g02004 Chr9 45007397 45008517 -
Ssu Ssu2g0427 Chr2 24997824 24998658 -
Trre Trre15g01637 Chr15 13103036 13104858 -
Vimu Vimu5g00802 Chr5 10267202 10268151 +
Vivi Vivi7g04938 Chr7 129650223 129653338 -
Pvu Pvu11g1903 Chr11 45982373 45984343 -
Lasa Lasa4g01318 Chr4 122704779 122706817 +
Mal Mal5g2004 Chr5 44413556 44415696 -
Mepo Mepo1g03256 Chr1 37554307 37555886 +
Mtr Mtr8g1392 Chr8 17272969 17277159 -
Phco Phco9g02006 Chr9 45013084 45014653 -
Spst Spst11g00399 Chr11 23960291 23960989 -
Trre Trre15g01636 Chr15 13096112 13097975 -
Vimu Vimu5g00800 Chr5 10250992 10251863 +
Vivi Vivi7g04935 Chr7 129523670 129524819 -
Pvu Pvu11g1904 Chr11 45996187 45997733 -
Lasa Lasa4g01319 Chr4 122865648 122867639 +
Mepo Mepo1g03257 Chr1 37578522 37598391 +
Mtr Mtr8g1391 Chr8 17268565 17270121 -
Phco Phco9g02007 Chr9 45023499 45024218 -
Spst Spst11g00398 Chr11 23794148 23794800 -
Ssu Ssu2g0426 Chr2 24936131 24937040 +
Pvu Pvu11g1905 Chr11 46008169 46009702 +
Phco Phco9g02008 Chr9 45036787 45037686 +
Pvu Pvu11g1906 Chr11 46022673 46024125 +
Arst Arst7g01025 Chr7 8276854 8277845 -
Cca Cca04g01621 Chr04 25051135 25051594 +
Lasa Lasa4g01320 Chr4 124038932 124039532 +
Mepo Mepo1g03258 Chr1 37586685 37587887 -
Mtr Mtr8g1390 Chr8 17256069 17258398 -
Seca Seca4g09649 Chr4 227067518 227068509 -
Spst Spst11g00397 Chr11 23735585 23736331 +
Trre Trre15g01635 Chr15 13093499 13094625 -
Vian Vian5g00440 Chr5 11678395 11679053 -
Vifa Vifa4g00460 Chr4 123563857 123564582 +
Vimu Vimu5g00795 Chr5 10195817 10196984 -
Vivi Vivi7g04934 Chr7 129495910 129502446 -
Pvu Pvu11g1907 Chr11 46026291 46027718 +
Arst Arst7g01026 Chr7 8296033 8297156 -
Lasa Lasa4g01321 Chr4 124301236 124301559 +
Mepo Mepo1g03259 Chr1 37590915 37592722 +
Mtr Mtr8g1389 Chr8 17235206 17237122 -
Phco Phco9g02009 Chr9 45037989 45047192 +
Spst Spst11g00396 Chr11 23721410 23722266 +
Ssu Ssu2g0425 Chr2 24879800 24880928 -
Vimu Vimu5g00792 Chr5 10095411 10096175 -
Vivi Vivi7g04929 Chr7 129196940 129198097 -