Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0229 ATGCAAGACCCATCAACGTTTCAGCCTATGAAAACCCATTTTCCAGAGCAAGAGCACCTCAAATGCCCTCGCTGTGAATCCACCAACACTAAATTCTGCTACTACAACAACTACAATCTCTCCCAGCCCCGCCACTTCTGCAAGAACTGCCGCCGCTACTGGACCAAGGGCGGCGCTCTCCGCAACATTCCTGTGGGTGGCGGCAGCCGCAAGAACACCAAGCGCTCCTCCAACCCCAAACGCCCTTCTTCTTCTTCCTCTACGTCGTCGGTGTCTTCTCCGCCGGTGTCGTCCACTTCAAACGCTGCTGCTCAGAAGTCCGAGCCCTCCGGAATCTACGTTACGGCGGCGGACCAGGACCGAAGAATGCTCGACATCAGCGGAAGTTTCAGCTCTCTCCTGGCCTCGAACGGCCAATTCGGAAGCTTGTTGGAGAGTCTGAATCCGACCGGGTCGGTTCGTGGGGTGCCGTTGAGTGCATTTTCAGAGACGCCGAATTCGGATTCGGGTCGAACTCCGGCAATGGAGTTGCAGAGCAACGGCAATTCAGAGAGCTTTTTGGGTATCCAAACTGGAGATTCAAACTGTTGGAATGGCGGCAATGGCTGGCCTGATCTCGCCATTTACACACCTGGTTCAACCTTCCAGTAG 651 0.5515 MQDPSTFQPMKTHFPEQEHLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSNPKRPSSSSSTSSVSSPPVSSTSNAAAQKSEPSGIYVTAADQDRRMLDISGSFSSLLASNGQFGSLLESLNPTGSVRGVPLSAFSETPNSDSGRTPAMELQSNGNSESFLGIQTGDSNCWNGGNGWPDLAIYTPGSTFQ* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0229 216 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Vvi9g0229 216 MobiDBLite consensus disorder prediction 61 108 - -
Vvi9g0229 216 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 164 IPR045174 GO:0003700|GO:0006355
Vvi9g0229 216 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Vvi9g0229 216 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Vvi9g0229 216 MobiDBLite consensus disorder prediction 158 179 - -
Vvi9g0229 216 MobiDBLite consensus disorder prediction 69 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0229 Vvi-Chr9 2272258 2272908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0229 13 144 C2C2-Dof Transcription Factor Family AT1G51700 58.273 1.97e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi9g0229 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0229 - - vvi:100263548 409.068