Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0803 ATGGTTTTTTCTTCCATGCCATCCTATCTTGATCCAGCCAACTGGCAACAGCCACACAATCATGAAGCTGGAAGTAGCGGTCTTCCAAACCAGCCGCCCCCTCCTCCACCTCCGCCTCCACAACCTCATGGAGGTGGCGGCACTGGCTCCATCAGGCCAGGTTCTATGGCTGACCGAGCCCGTCTCGCCAATATACCGTTGCCCGAAGCTGCTTTGAAGTGCCCAAGATGTGAATCAACAAACACAAAATTTTGCTACTTCAACAACTACAGTCTCTCCCAGCCTCGACACTTCTGCAAGACCTGTAGAAGGTACTGGACTAGAGGTGGTGCTCTGAGAAATGTTCCAGTGGGAGGAGGTTGCCGGAGAAACAAAAGAAGCAAAGGAAGTAGCTCAAAATCTCCTGTCAGCGGAGATCGCCAGGCGGGTTCTAGTTCAACAGGTGCAATCCACTCCAATTGTAGCACTGCTGAAATCCTAGGCCTCGCACCCCAGATTCCACCCATGCGTTTCATGGCCCCTTTACACCATCTCGCTGACTATGGCGCCGGCGATATAGGCTTAAACTACAGTGGAATTCCTACAGCAGTCGGGGGCACAGGTGACATGAATTTTCAGATAGGAAGTCATCTAGGTGGTGGCAGTAGCGGCGGAGCTGGAGGTGTTGGTGGTTCATTTTTATCGGTTGGAGGTTTAGAGCAGTGGCGATTGCAGCAAACACAGCAATTCCCCTTCTTAGGTGGGTTGGATCCGCCACCAGGGTTATACCCATTAGAGGGTGGTGTTGAGCCATCCAATTATGTTGGGGGAAGCAGTCAGGTTCGGCCGAAGCTAACTGGGTCTGGGTTAAGTCAGGTGGCTTCCGTGAAGATGGAAGATAATCATGAGATGAATGTGGCAAGGCAGTTCTTGGGAATTCCAGGAAATGATCAGTATTGGGGTGGTAATGCATGGACAGATCTAGCTAGTTTTAGCTCTTCTTCCACTAGTCACCCCTTATAA 1002 0.51 MVFSSMPSYLDPANWQQPHNHEAGSSGLPNQPPPPPPPPPQPHGGGGTGSIRPGSMADRARLANIPLPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPVSGDRQAGSSSTGAIHSNCSTAEILGLAPQIPPMRFMAPLHHLADYGAGDIGLNYSGIPTAVGGTGDMNFQIGSHLGGGSSGGAGGVGGSFLSVGGLEQWRLQQTQQFPFLGGLDPPPGLYPLEGGVEPSNYVGGSSQVRPKLTGSGLSQVASVKMEDNHEMNVARQFLGIPGNDQYWGGNAWTDLASFSSSSTSHPL* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0803 333 MobiDBLite consensus disorder prediction 130 150 - -
Vvi8g0803 333 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 151 IPR045174 GO:0003700|GO:0006355
Vvi8g0803 333 MobiDBLite consensus disorder prediction 1 27 - -
Vvi8g0803 333 MobiDBLite consensus disorder prediction 1 55 - -
Vvi8g0803 333 MobiDBLite consensus disorder prediction 28 44 - -
Vvi8g0803 333 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Vvi8g0803 333 MobiDBLite consensus disorder prediction 116 150 - -
Vvi8g0803 333 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Vvi8g0803 333 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0803 Vvi-Chr8 14550840 14551998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0803 37 331 C2C2-Dof Transcription Factor Family AT3G55370 41.975 2.50e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi8g0803 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0803 - - vvi:100263156 560.836