Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0264 ATGGAGGGAGGAGTTTGGAAGGCTAATGTTGAGATATCGCCCAATTGTCCCCGTTGCGGCTCTTCCAATACCAAATTTTGCTACTACAACAACTATAGCCTCACACAGCCCCGCTACTTCTGCAAGGGCTGCAGGCGGTATTGGACCAAGGGCGGATCACTCCGGAACGTGCCCGTCGGCGGAGGCTGCAGGAAGAACCGGAGAGGCAAGTCGTTCAGGATATTGACCGATCGCCTTGCCTCCAAGGGTTTGGCCAGTGATCCTGACCCCGACCCTAGTGGAAGTGCCTTGGCTGACTCCGCCACTACCTCTTCTGGGCTACACGATGCTTCCGCATCCAATATTGATCTTGCTCTTGTTTATGCCAACTTCCTAAACCAGATGCCGGAGCCAAAGTCAACAGGGTTTGAAATGCCAGAATTGCCTTGTGAATTCCATCCATCTTTCCAGCTTTCATCAACTCTTTCAACGTCGAACACCAGCCTGGATTCATCACATATTCAATTACCGCCGGACACTCATTTGAGTGAGGATAACCAGGTCTATCTTAGTGGCTTCCACCCTATTCACACCCATCATGACCATGACTCTGCCAATATTTATGGGCTGCCACCACTGCCAGGCCAAGAGGTTGCTTCTCCGGAGATGTTGTGGCCCATTTCTCAAGCCATGGTTCAGAATCAGACCTTGCACGAAACACAATTGCCAGCTCTGCACCCAGAAGCTGCTCAACATCCAAATCATGTAGCTGTCACTGCTGGTAACTGGAGCCCATTTGATTTGTCATGCTACGAAACCTTCTCTCGGCCTTGA 813 0.5105 MEGGVWKANVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKSFRILTDRLASKGLASDPDPDPSGSALADSATTSSGLHDASASNIDLALVYANFLNQMPEPKSTGFEMPELPCEFHPSFQLSSTLSTSNTSLDSSHIQLPPDTHLSEDNQVYLSGFHPIHTHHDHDSANIYGLPPLPGQEVASPEMLWPISQAMVQNQTLHETQLPALHPEAAQHPNHVAVTAGNWSPFDLSCYETFSRP* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0264 270 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 161 IPR045174 GO:0003700|GO:0006355
Vvi8g0264 270 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Vvi8g0264 270 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Vvi8g0264 270 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Vvi8g0264 270 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0264 Vvi-Chr8 7109736 7110548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0264 5 262 C2C2-Dof Transcription Factor Family AT3G52440 39.416 6.45e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi8g0264 zf-Dof 3.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0264 - - vvi:104880004 557.37