Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0104 ATGAACGGTGGAGATTTGGCTGTGAGCAGAGACCCTGCTATCAAGCTCTTCGGCACCACGATTCAGACCCAGATTTGCTCCAACTCCCCTCAGAAATCATTGGATGCTCCCAGTGAAATAACAAAAGCTGAAGCTGAGGATCCATGTGCAGAAGACTCTAGAAAGCCAGATGGGTCTTCAGTTTCTGAGGATGGTAAGGAGGAGCAGCAAACTCAAGTGCAGATGAGTGGGCTGCAAGTGCATAAGGACCAGGGCGAGACCAATAGTTCAGCCCAAGAAAAAGTACTGAAGAAGCCGGACAAGATTCTCCCATGTCCGCGATGCAACAGTTTAGAGACAAAATTCTGCTACTTCAACAACTACAATGTGAACCAACCCAGGCACTTCTGCAAAAACTGCCAGAGGTACTGGACGGCAGGTGGAACAATGAGAAATGTTCCCGTTGGTGCTGGGCGGCGGAAGAACAAGCATTTAGCCTCCCAATATCGTCAGATAATGGTATCCTCTGATGGAGTACCCACTACTGTGATTGAGGCGTCAGACTCATCTAATCAACAAATTCTCTCATGTGGCGAAACTTCAACCACTTTTAGGCCTTCAACAGCAAGTGGAACAGTCCTAAAATTTGGTCCTGAAGCACCTCTATGCAAGTCCATGGAGACGGTGCTTAGTATCAGGGAACAGAAGAGATGTGCTGAGATGCGAACTGTCAATTGCGGAGGAAATGGGGAGGAGCCATCCTCATGTGCATCTTCAGTGTCGGCTCCTAGTTTCCCAGAAAATGAGTTTCCTGAAAATGTTGGGCATAAGGACCGACCTAGTTTGCCTGCATCTCGTAGTGAGATTCATCCACAACTTCATCAGCCCTGTTACCCTGTTCCTCCATGGGCTTTCCCTTGGAATCCAGGTTGGACCAATGTAGCTCCTGTAGCACCACCTCAGTGCTCGTCTGACACTGTTTATGCTCCGAACAACAGTAATCCAAATTCAGTTCAGTGGTGCTCCAGACCAATGCTGGCAGTTCCTGGCTTTTGTGCACCAACCATACCTCTACAGCTTGTGCCTCCCTCATATTGGGGTTGCATGCCCATCTGGGGTGCAGGAACAGGGAACATCTCCTTGGCTGGATCCAATGACTGCCTGTCTCCCTCATCCTCCACGAGCAACAGTTGTTCAGGCAATGCCTCACCAACACTAGGCAAGCATTCCAGAGATGCACAACCAGCAGAGGAACAGAAGCTAGAGAAGTGTGTTTTGGTTCCAAAGACTCTCAGAATTATTGACCCAGATGAGGCTTCAAAGAGTTCTATCTGGGCTACATTAGGCATTAAGCCTGACCAGAAAGCACCCATATCAAAAGGCGGTATTTTCAAAGCATTTGAACCCAAGTCTGGAGCCAAGACCGATCTATCAGATGCCACTCAGGTACTAGAAGCAAACCCTGCAGCTCTGTCTCGCTCCCAAACATTCAAAGAAAGTACGTAA 1485 0.4848 MNGGDLAVSRDPAIKLFGTTIQTQICSNSPQKSLDAPSEITKAEAEDPCAEDSRKPDGSSVSEDGKEEQQTQVQMSGLQVHKDQGETNSSAQEKVLKKPDKILPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRQIMVSSDGVPTTVIEASDSSNQQILSCGETSTTFRPSTASGTVLKFGPEAPLCKSMETVLSIREQKRCAEMRTVNCGGNGEEPSSCASSVSAPSFPENEFPENVGHKDRPSLPASRSEIHPQLHQPCYPVPPWAFPWNPGWTNVAPVAPPQCSSDTVYAPNNSNPNSVQWCSRPMLAVPGFCAPTIPLQLVPPSYWGCMPIWGAGTGNISLAGSNDCLSPSSSTSNSCSGNASPTLGKHSRDAQPAEEQKLEKCVLVPKTLRIIDPDEASKSSIWATLGIKPDQKAPISKGGIFKAFEPKSGAKTDLSDATQVLEANPAALSRSQTFKEST* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0104 494 MobiDBLite consensus disorder prediction 391 412 - -
Vvi8g0104 494 ProSitePatterns Zinc finger Dof-type signature. 105 141 IPR003851 GO:0003677|GO:0006355
Vvi8g0104 494 Pfam Dof domain, zinc finger 100 157 IPR003851 GO:0003677|GO:0006355
Vvi8g0104 494 MobiDBLite consensus disorder prediction 39 64 - -
Vvi8g0104 494 MobiDBLite consensus disorder prediction 242 281 - -
Vvi8g0104 494 MobiDBLite consensus disorder prediction 26 95 - -
Vvi8g0104 494 PANTHER CYCLIC DOF FACTOR 2 10 494 IPR045174 GO:0003700|GO:0006355
Vvi8g0104 494 MobiDBLite consensus disorder prediction 65 92 - -
Vvi8g0104 494 ProSiteProfiles Zinc finger Dof-type profile. 103 157 IPR003851 GO:0003677|GO:0006355
Vvi8g0104 494 MobiDBLite consensus disorder prediction 242 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0104 Vvi-Chr8 1937486 1939983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0104 38 494 C2C2-Dof Transcription Factor Family AT5G39660 37.917 2.22e-71 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi8g0104 zf-Dof 7.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0104 - - vvi:100241530 1005.36