Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1004 ATGCCGTCTGACTCCGGCGACAAACGACCATCAAAACCCCATCAAACGGGAGCTCCACCACCAGAACAAGAACACCTTCCCTGCCCACGTTGCGATTCCACCAACACTAAGTTCTGCTACTACAACAACTACAACTTCTCTCAGCCTCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACTCACGGCGGCACTCTTCGGGACATTCCCGTCGGAGGTGGAAGCCGCAAGAACGCCAAGCGCTCTCGCACCACCACCTCTTCCGCCTCTTCTCAGGAACCCTTACCGGCTACTCCTGTTTTGGTCTCTCTCTCCACCAATCATGCCACATCTATGCCGTTTGTGGGTGATGTTAAGCCTACAGTGAACGTGTGCGGGAGCTTCACTTCTCTGCTTAATACGCAGGGGCCTGGGTTTTTGGCTCTGGGAGGATTCGGCCTGGGGCTAGGACCTGGTTTCGAGGACATGGGATTTGGGCTTGGAAGAGGGGTCTGGCCATTCCCTGGAGCCGGAGACGGTGGTGCTAGTGGCGGCACCGGCGGTGGCACTGCTCTAGTGGGAAACACGTGGCAGTTTGAGAGTGGCGAAGGTGGGTTTGTTGCTGGAGATTGCTTTTCTTGGCCGGATCTTGCTATTTCCACACCCGGGAATGGTCTCAAATGA 663 0.5656 MPSDSGDKRPSKPHQTGAPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTTTSSASSQEPLPATPVLVSLSTNHATSMPFVGDVKPTVNVCGSFTSLLNTQGPGFLALGGFGLGLGPGFEDMGFGLGRGVWPFPGAGDGGASGGTGGGTALVGNTWQFESGEGGFVAGDCFSWPDLAISTPGNGLK* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1004 220 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Vvi7g1004 220 Pfam Dof domain, zinc finger 24 80 IPR003851 GO:0003677|GO:0006355
Vvi7g1004 220 MobiDBLite consensus disorder prediction 1 27 - -
Vvi7g1004 220 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Vvi7g1004 220 MobiDBLite consensus disorder prediction 67 97 - -
Vvi7g1004 220 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 107 IPR045174 GO:0003700|GO:0006355
Vvi7g1004 220 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1004 Vvi-Chr7 14346873 14347535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1004 1 220 C2C2-Dof Transcription Factor Family AT3G50410 52.174 5.09e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi7g1004 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1004 - - vvi:100855283 414.846