Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0618 ATGGAACCAGACTCTAAAGAAAAATCCAATGAAGAGAAAGGAGAGGTACGATACAGAGGTGTGCGAAGGCGGCCTTGGGGAAAATTTGCAGCAGAGATTCGTGACCCAGCTAGGCAAGGAGCGCGCATGTGGCTTGGGACTTTCACTACGGCAGAGGAAGCAGCAAGAGCTTATGATCGAGCAGCTTATGAAATGAGGGGTCCCTTAGCCATTCTCAACTTCCCTGAGGAATATGAAAATGTTGCTTGTCCTTCTCACTCTTCATCAGTTAGGTTCCCTGAGGAACGTCAAATTGTTGTATCACCTCCTTGCTCTTCATCATCTTCGCCATCATCATCCTCATTGATGTTTGAGAATACAGAAAGAACTAGGGATGTGCATGAAAAACAAGTTTTTGAATTTGAGTACTTGGATGACAAGTTGTTAGAAGACCTTCTTGAGTGTGAGGAAAAGAAAACCAAGAACGAGTGA 471 0.4437 MEPDSKEKSNEEKGEVRYRGVRRRPWGKFAAEIRDPARQGARMWLGTFTTAEEAARAYDRAAYEMRGPLAILNFPEEYENVACPSHSSSVRFPEERQIVVSPPCSSSSSPSSSSLMFENTERTRDVHEKQVFEFEYLDDKLLEDLLECEEKKTKNE* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0618 156 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Vvi7g0618 156 MobiDBLite consensus disorder prediction 101 122 - -
Vvi7g0618 156 FunFam Ethylene-responsive transcription factor 2 16 76 - -
Vvi7g0618 156 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Vvi7g0618 156 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Vvi7g0618 156 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Vvi7g0618 156 PANTHER DNA-BINDING DOMAIN 7 152 IPR044808 GO:0003700|GO:0009873
Vvi7g0618 156 MobiDBLite consensus disorder prediction 101 119 - -
Vvi7g0618 156 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Vvi7g0618 156 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vvi7g0618 156 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vvi7g0618 156 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0618 Vvi-Chr7 6020847 6021317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0618 15 152 AP2-EREBP Transcription Factor Family AT3G23230 58.696 2.85e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi7g0618 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0618 - - vvi:100251467 254.603