Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0470 ATGGTTTTCTCATCTGTTCCACTCTATCCAGATCCTTTGAACTGGCAGCAGCAACCCAATCGTCAAGAAGGAAGTGGCAATGAAAATCCCCAGCTTCCACCACCACCACCTCAGGCCGGTAGTCTGGGCTCGATTAGACCTGGTTCGATGGCTGATCGAGCACGGGTAGCTAAGATACCACAACCAGAGACAGCACTGAAGTGTCCCAGATGCGAATCGACCAATACTAAGTTTTGCTACTTCAATAATTATAGTCTCACACAGCCCCGCCACTTCTGTAAAACATGTCGACGATACTGGACGAGAGGAGGTGCCCTTAGGAATGTTCCGGTGGGTGGAGGATGCCGTAGAAACAAGAAAAGCAAAAGCAGTAGCTCGAAGTCGCCAGCTTCTACTGAAAGGCATGCTGGTTCGAACTCGACCAGTGCAATTCCCTCTAGTGGCACCGCAGAGATAATTGGTCACTTGCCAAAACAAGCTTCTCAGTTACCCTTCATGCCCACTTTACAAAATCTTACTCAGTATGGTATTGGGAATATGAGCTTGAACTTTGGTGGAAATCTGCCACATGTAATGGCATCCAGTGGTGGTGGCCAGAATGAAATGGGTTTTCATATAGGTAGTAATTCAGTAGGTTTGTCCGCAGAAGGAGTGGAGCAGTGGCGTTTGCAACAGGTTCAGCAATTTCCTTTCTTGGGTAGCTTTGAGCCACCAACAGGTTTGTACCCATTTCAAAATGAAGATGTCAAAGCATCGTCTTCTGTAGATAGAAACGGCCATCTTCCCCACATGGTGTCGGGCTCTGGGGTTGCCCAGCTGACTGCAGTGAAATTGCTAGAAAACCAAGGGCTAAACTTGTCAAGGCAGTTCTTGGATACTTCAGAAAATAATCAGTATTGGGTTGGAAATGCGTGGACGGATTTCTCTGGTCTCAACTCTTCCTCCACTAGCAATCGCTTATAA 963 0.4725 MVFSSVPLYPDPLNWQQQPNRQEGSGNENPQLPPPPPQAGSLGSIRPGSMADRARVAKIPQPETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSKSSSSKSPASTERHAGSNSTSAIPSSGTAEIIGHLPKQASQLPFMPTLQNLTQYGIGNMSLNFGGNLPHVMASSGGGQNEMGFHIGSNSVGLSAEGVEQWRLQQVQQFPFLGSFEPPTGLYPFQNEDVKASSSVDRNGHLPHMVSGSGVAQLTAVKLLENQGLNLSRQFLDTSENNQYWVGNAWTDFSGLNSSSTSNRL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0470 320 Pfam Dof domain, zinc finger 65 120 IPR003851 GO:0003677|GO:0006355
Vvi6g0470 320 ProSitePatterns Zinc finger Dof-type signature. 68 104 IPR003851 GO:0003677|GO:0006355
Vvi6g0470 320 MobiDBLite consensus disorder prediction 1 47 - -
Vvi6g0470 320 MobiDBLite consensus disorder prediction 10 28 - -
Vvi6g0470 320 MobiDBLite consensus disorder prediction 110 148 - -
Vvi6g0470 320 ProSiteProfiles Zinc finger Dof-type profile. 66 120 IPR003851 GO:0003677|GO:0006355
Vvi6g0470 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 53 212 IPR045174 GO:0003700|GO:0006355
Vvi6g0470 320 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0470 Vvi-Chr6 5492117 5493230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0470 34 314 C2C2-Dof Transcription Factor Family AT3G55370 42.949 5.09e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi6g0470 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0470 - - vvi:100246640 615.92