Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0358 ATGGATGCCTCAAGTGCACAACGCCAGGAAATGGATACCCAGTCACTAGAAAGCATGTTGGTTTGCTCAAAAGCACAGCAGGAGAGGAAACCAAGGCCACCAGAACAAGCTCTAAAATGCCCAAGATGTGATTCCACCAATACCAAGTTCTGTTACTACAACAACTACAGTCTGTCTCAGCCAAGGTACTTCTGCAAGTCATGCAGGAGGTACTGGACCAAAGGAGGAACCCTAAGGAATGTTCCTGTTGGGGGAGGGTGCAGGAAGAACAAGAGATCATCATCGTCTTCATCATCCAAAAGGACCCAAGATCAACCACTCACAACCAATCCCAATCCACTCAATGTTCTCCCACCCCTAACTTATGACTCCAATGACCTCACCCTTGCATTTGCTAGGCTCCAGAAACAAACTGGTGGGCAGTTAGGGTATGATGATCATCATCATGATCTTGCTCTTATGGGGAACCCTAACAATACCCATTGTGATGTTCTTGGAAACCAGTGTGTCAACACTTGTGGAACTACTACTCCTGGCCTTCTTGATGCTCTGAGGACCAACTTTCTAGAAACCCCATCTGGGTATCATAATCTGTATTATGGGTTTGGTAATGGAGGCATGGGAGGAGAGGTGGAAAATGGTGGAGTTGGTGGTGAGCATATGGTTCTGCCATATGAAGAAATGAGTGGTGCAACTACTACAGCAGTGACAGTAACCACAATGAAGCAAGAGTTGTGCCATGGGAGGGAAGGTGAGAATAGGGTTCTGTGGGGGTTTCCATGGCAGCAGCTCAACCCAGATGGGAGCATGGGTGAAGTTGATTCAGGAAGAGAGAGCTGGAATGGACTTGCTTCATCCTGGCATGGGCTTCTCAACAGTCCTCTCATGTGA 891 0.4759 MDASSAQRQEMDTQSLESMLVCSKAQQERKPRPPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSKRTQDQPLTTNPNPLNVLPPLTYDSNDLTLAFARLQKQTGGQLGYDDHHHDLALMGNPNNTHCDVLGNQCVNTCGTTTPGLLDALRTNFLETPSGYHNLYYGFGNGGMGGEVENGGVGGEHMVLPYEEMSGATTTAVTVTTMKQELCHGREGENRVLWGFPWQQLNPDGSMGEVDSGRESWNGLASSWHGLLNSPLM* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0358 296 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Vvi6g0358 296 MobiDBLite consensus disorder prediction 1 22 - -
Vvi6g0358 296 MobiDBLite consensus disorder prediction 1 39 - -
Vvi6g0358 296 MobiDBLite consensus disorder prediction 83 117 - -
Vvi6g0358 296 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Vvi6g0358 296 MobiDBLite consensus disorder prediction 89 117 - -
Vvi6g0358 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 154 IPR045174 GO:0003700|GO:0006355
Vvi6g0358 296 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0358 Vvi-Chr6 4265366 4267085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0358 8 296 C2C2-Dof Transcription Factor Family AT2G28510 39.755 3.37e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi6g0358 zf-Dof 6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0358 - - vvi:100243211 582.408