Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0264 ATGTTAAGACATGGGCATGAAGAGCAGAAACTAGACACACCAAAGAATACCTCAAGTACTTTGGATGAGGGTGCAAACATGTTCACATATAAACTTATTGAGGCTGAGGGCAATGGATCCTTGTTTACTTACCCAGAGGATGAAGGCATTGGAGTGGAGTATTTACTAGCGGAACCTAAGTGTAACAATTTGGTTGATGATGTTTTAGGTTTTGAGACATTGAATCCTCAGAAATTCTTCAGTGTTGGAGATTTTTCACACGCTGTTGAGAATGACCAAAGAAAAATTGATGGTGATGCACAGGATTCTAATTTCACTCGAGAAGAAGAGCATGCAAGCCTAGAATTTCTTGATGGAATGCTGGAAGGAACTGAAGGAGTTCTTCAAGGGATGAATAAAGTACCATGTTCTTGTGAAGATTTTCTTTTGGATACCAAACTTGCTGATCCAGTTCCAAATTTGGAGCATGGTCCATGTGGAGGCTCCTCTTTTGGAAACTTGGGTTTGGAGAGCCCCTCTTCAAGTTTCAATGGAAGAGATTCTGGTGTTAAATATACTTATAATCAGAATTCTTCTTTGCATGACAACATGACAATTCATGGATTACATGAGGACTTTAAGAACATATTTGGAGGAGGAACATCAATTAAGGACAAGCAGTGGCTAAAACTCCATATTTCATTTGGTTTGCAGAACCTTGTAGAGTTGGACAACGGTTTGAACCTCTTGAAACAGGGTGTAACTTTCAATGAGAATGAAGCCAAATCAAACTTCTCATCTAGGAATGAGTTCTGCAGCAGTGCATTCATCTCCTTCTCAAGTGTGGTCAATGATAAAACAGTGTCAGGACGCCAACAAGTGAAAAATGATTCTTTGCAGACATTATCTTCTGATGATAACAGAGTTGGATTTTGTATTCTAGATTCAGGAGAAAAAGATTTGCTTGTTACACAAAAAAGATTGCGTAAGCCCACTCGGAGGTACATTGAAGAACCTTCAGAGCAGAAAGGAAAATATCATAGTAGAAAATGTGGAATTTCTTATAAAAGGTCGAGGGATAAATTTCCACATGTTGGATCTCATGAGCAGCATCGCCAAGCTGGATTTGGAGCATCATCATTGGATTGTCAACAGGAATTCTTTGAAGGAGCCTGTATCCAAGTACCATTTGGTCTTCCTGTACAGGAAGGGTGCTCAAAGAGAAATACATCAATTTTGGGGTGCCAGGAATCCGAGGATTGCAAGGACAGTGGAAGCTTGGTTCCAAATGAAATTTCTGAAATGGAGCCTTTTCCAGCTGAATCTCAAGATGATATGTCTGAAGACGATTGTATCACGATTATAAATACTCAAAAAGGTAGAAGTCGTAGAAAACACCATATGTTGTGGACACTTTCTGAGGTGATGAAGTTGATTGAAGGTGTTTCTCAGTATGGTGTTGGAAGGTGGACTGAAATAAAGCGGCTACTTTTTTCATCATCTACTCATCGCACATCTGTAGATCTTAAGGACAAATGGCGTAATCTTCTAAGAGCTAGCTGCACAAGGTTGCATAATAAGAGAGAGGTCGAGCAAGGACGCAAGCATGCATCCCACCAAATTCCGCAGTCTGTTCTGGGCCGTGTGAGAGAGCTGGCCCTCATTTATCCATACCCAAGAGGACGCAAGTCCAAGGATACGTGTACCCCTGTTGTGTCTCCCATCCCTTCCTCCACGGGTAAACTGGTTCCCATGTCGACTGCTGTAAAAGGGTAA 1755 0.4108 MLRHGHEEQKLDTPKNTSSTLDEGANMFTYKLIEAEGNGSLFTYPEDEGIGVEYLLAEPKCNNLVDDVLGFETLNPQKFFSVGDFSHAVENDQRKIDGDAQDSNFTREEEHASLEFLDGMLEGTEGVLQGMNKVPCSCEDFLLDTKLADPVPNLEHGPCGGSSFGNLGLESPSSSFNGRDSGVKYTYNQNSSLHDNMTIHGLHEDFKNIFGGGTSIKDKQWLKLHISFGLQNLVELDNGLNLLKQGVTFNENEAKSNFSSRNEFCSSAFISFSSVVNDKTVSGRQQVKNDSLQTLSSDDNRVGFCILDSGEKDLLVTQKRLRKPTRRYIEEPSEQKGKYHSRKCGISYKRSRDKFPHVGSHEQHRQAGFGASSLDCQQEFFEGACIQVPFGLPVQEGCSKRNTSILGCQESEDCKDSGSLVPNEISEMEPFPAESQDDMSEDDCITIINTQKGRSRRKHHMLWTLSEVMKLIEGVSQYGVGRWTEIKRLLFSSSTHRTSVDLKDKWRNLLRASCTRLHNKREVEQGRKHASHQIPQSVLGRVRELALIYPYPRGRKSKDTCTPVVSPIPSSTGKLVPMSTAVKG* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0264 584 CDD SANT_TRF 463 511 - -
Vvi6g0264 584 Gene3D - 449 560 - -
Vvi6g0264 584 Pfam Myb-like DNA-binding domain 463 510 IPR001005 -
Vvi6g0264 584 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 18 558 - -
Vvi6g0264 584 MobiDBLite consensus disorder prediction 1 22 - -
Vvi6g0264 584 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 455 514 IPR017930 -
Vvi6g0264 584 ProSiteProfiles Myb-like domain profile. 463 510 IPR001005 -
Vvi6g0264 584 SUPERFAMILY Homeodomain-like 457 517 IPR009057 -
Vvi6g0264 584 SMART sant 459 512 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0264 Vvi-Chr6 3026594 3045281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0264 463 509 Single Myb Histone (SMH) Gene Family AT1G72740 42.857 2.02e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi6g0264 Myb_DNA-binding 1.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0264 - - vvi:100853565 1194.1