Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0513 ATGCAAGACATATTCGGATCAGTTCGCCGATCTCTAGTATTTCGACCAGCATCCGGCGAAGATGGAGAATATGGAGGATATGGAGGCCCGGTGGAGAAAATATGGTCCAGCATTCGCAAATCTGGAATCGGACTCTTTTCAAGACAGTCTGTTCGTGCGTTGCCTCCGATCCCCAAAGATGAGGCGCCTTCGATCCGGTGGAGGAAAGGCGAGTTAATCGGGTGTGGCGCATTCGGGCGAGTCTATATGGGGATGAATCTTGATTCCGGAGAGCTTCTTGCCATTAAGCAGGTTTCAATTGCTGCGAATAGTGCTTCAAAAGAAAAAACGCAGGCTCACATCAGAGAGCTTGAGGAAGAAGTGAAGCTTCTGAAGAATCTCTCACATCCAAACATTGTTAGATATTTGGGAACTGCAAGAGAAGATGAGTCATTGAACATTTTGTTGGAGTTTGTGCCGGGAGGGTCCATTTCGTCACTCTTAGGAAAATTTGGATCCTTCCCTGAGTCTGTTATAAGAATGTATACAAAACAGCTATTATTAGGATTGGAATACCTTCACAAAAATGGTATTATGCATAGGGACATAAAGGGGGCAAATATCCTGGTTGATAATAAGGGATGCATTAAACTTGCAGACTTTGGTGCATCTAAGAAAGTTGTTGAGCTGGCTACTATGACTGGTGCCAAGTCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTTGGATGTACTGTTATTGAGATGGCTACAGGAAAACCTCCTTGGAGCCAGCAATATCAGGAGGTTGCTGCTCTCTTCCATATAGGGACGACTAAATCTCATCCTCCAATTCCAGAGCATCTTACTGCAGAGGCAAAAGATTTTCTATTGAAATGTTTACAAAAGGAACCAAACTTGAGGCCTGCTGCTTCAGAATTGCTGCAGCATCCATTTGTATCTGGGGAGTATCAGGAACCTCATCCAGTGTTTCAAACTTCAGTTATGGAAAATTCTGGAAACATGATGGCAACATCTGAGACAGACCTTAAGAGCTTCCCAAACCCAGTAATCAGAAGGTCAAACTGCACAAGCTCAAATAATGTTTGTAACATGGGTAGTGTGAGATGCTCAACTGTATACCCTGAGAAGTTTTCAGGAACTGGACCCCTTTGGGGAGCAAACAGTTGTGATGATGACATGTGTCAGATTGATGATAAAGACGATTTTATAGTTCATCAATCAGTAAAGTTCGGTTCAGCCATTCTTTCTGATCATCTAAATAAGAGTTTTAACCCTATGTGTGAGCCCACTGATGATTGGCCATGCAAATTTGATGAGAGTCCAGAGTTGACTAAGAGCGGAGCAAACTTATCCTCTCACCAAACCATTAGTAAGCCTGCTGGCAGCCCTAGAGCATCTAATGAGAGGGAGAATGACTTCACATTTCCATGTGGGCCATTAGTTGGAGATGATGATGATGAAGTTACAGAGTCAAAAATTAGAGCCTTTCTAGATGAAAAGGCCTTAGATTTGAAGAAGCTTCAAACGCCACTATATGAAGAATTTTACAACAGCACATTGAATGCAGCTGGTCCTCCAAGTGCTGTTGGGAAATCACATGACAATGTTACAAATTTTTTGAACTTACCACCTAAAAGCAGGTCACCAAATCAAACCCCTACCAGAAGGTTGTCAGCTGCTGTTGATGCTGCCTGTATTTCCAACTCTGCAAATCATACAAAACGTGGATTAAATGTTGGCACTATAAGTGATAGAACTTTGAAGGAAATTCAGTCGCCTCAGCTGAGTGAATGGAAAGAGCTTCTTCTTGATGCCCAGCAGGAACCAGTCAGTTTAAGCACAAACTTCTCTGAGAGACGAAGAAAATGGAAAGAAGAGCTTGATCAAGAGCTTGAGAAGAAACGAGAATTGTTGCGCCAGGCAGGTGTTGGAGGGAAGACAGCATCTCCAAAGGATCAGATTCTAAATCGGCCAAGAGAGCGGTTAAGATTTGCATTCCCAGGAAAATGA 2061 0.4304 MQDIFGSVRRSLVFRPASGEDGEYGGYGGPVEKIWSSIRKSGIGLFSRQSVRALPPIPKDEAPSIRWRKGELIGCGAFGRVYMGMNLDSGELLAIKQVSIAANSASKEKTQAHIRELEEEVKLLKNLSHPNIVRYLGTAREDESLNILLEFVPGGSISSLLGKFGSFPESVIRMYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATMTGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEHLTAEAKDFLLKCLQKEPNLRPAASELLQHPFVSGEYQEPHPVFQTSVMENSGNMMATSETDLKSFPNPVIRRSNCTSSNNVCNMGSVRCSTVYPEKFSGTGPLWGANSCDDDMCQIDDKDDFIVHQSVKFGSAILSDHLNKSFNPMCEPTDDWPCKFDESPELTKSGANLSSHQTISKPAGSPRASNERENDFTFPCGPLVGDDDDEVTESKIRAFLDEKALDLKKLQTPLYEEFYNSTLNAAGPPSAVGKSHDNVTNFLNLPPKSRSPNQTPTRRLSAAVDAACISNSANHTKRGLNVGTISDRTLKEIQSPQLSEWKELLLDAQQEPVSLSTNFSERRRKWKEELDQELEKKRELLRQAGVGGKTASPKDQILNRPRERLRFAFPGK* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0513 686 Coils Coil 100 127 - -
Vvi5g0513 686 MobiDBLite consensus disorder prediction 461 486 - -
Vvi5g0513 686 ProSiteProfiles Protein kinase domain profile. 67 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0513 686 MobiDBLite consensus disorder prediction 655 676 - -
Vvi5g0513 686 Gene3D Transferase(Phosphotransferase) domain 1 66 363 - -
Vvi5g0513 686 FunFam Mitogen-activated protein kinase kinase kinase 2 66 358 - -
Vvi5g0513 686 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vvi5g0513 686 Pfam Protein kinase domain 68 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0513 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Vvi5g0513 686 FunFam Serine/threonine-protein kinase STE11 63 157 - -
Vvi5g0513 686 SMART serkin_6 67 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0513 686 SUPERFAMILY Protein kinase-like (PK-like) 66 375 IPR011009 -
Vvi5g0513 686 Coils Coil 637 657 - -
Vvi5g0513 686 CDD STKc_MAPKKK 66 329 - -
Vvi5g0513 686 MobiDBLite consensus disorder prediction 461 488 - -
Vvi5g0513 686 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 62 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0513 Vvi-Chr5 4619268 4632977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0513 1 664 MAP Kinase Kinase Kinase AT3G06030 62.819 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi5g0513 Pkinase 9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0513 - K20606 vvi:100232947 1348.18