Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0688 ATGGAGTTGGAATCTGCCGATTCATCAAATCTGCCTCCTCCTAAAGCGCCAGAAGTGCAACCTTCTGTTGCCACAGGTTCTGGACCAGATAATGCTGCACGTGATGCACCATCTAGGCTATCATCATGGGCCAAAAATTTGAAAATTCCTCAGTCATTGGCAGGGGGACAAGATGAATCTCCAACTGGAACTACTGCAAAATCAAGCTTTGCACGTTTCACTAGTGGGATTGGATTGCGCTTGTCTCCAAAAACTCCTACATCTGAAGATGGTCCTGATGGATCTCCAACAACGGCACAGCCTGGTTTATTTGGAACATTTACAAAAGGAATAGTTGACTCATCTAGGAATGCAGTGAAGGCTGTGCAGGTCAAGGCTCGTCATGTGGTCTCTCAAAATAAACGAAGATATCAGGAGGGGGGATTTGACTTGGATATGACATACATCACAGAGAATATAATTGCCATGGGGTTCCCTGCTGGTGATATGAGCTCTGGGTTTTTAGGATATGTTGAGGGTTTCTACCGAAACCATATGGAGGAAGTGATCAAGTTCTTTGAAACACATCACAAGGACAAATACAAAGTATACAATCTTTGCTCGGAGAGACTGTATGATGCATCCTTGTTTGAAGGAAAGGTGGCTAGTTTCCCATTTGATGACCATAATTGCCCCCCAATTCAACTCATAACTTTATTTTGTCAAAGTGCATACTCATGGTTGAAGGAGGATATTGAGAATGTTGTGGTTGTGCACTGTAAAGCTGGAATGGCAAGGACAGGATTAATGATTTCTAGCCTTCTTCTATTCCTGAAGTTCTTCCCTACAGCTGAGGAGTCCATTGATTACTACAACCAGAAAAGATGTTTTGATGGGAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGGATCTTAACATACTTCAACGGTGAAAACCAGCCTGGGCGCAGATGCATGCTCAGGGGATTTCGGCTTCACAGGTGCCCTTATTGGATTAGGCCCTCCATTACTGTCTCTGACCATAATGGTGTTCTCTTCTCTACCAAAAAACATCCACGAACCAAGGATCTGTCGCCAGAAGAGTTTTGGTTCAGCGCACCAAAGAAAGGGATAATGGTCTTTGCACTTCCAGGGGAGCCTGGCTTGACACCATTGGCTGGGGATTTTAAAATCCATTTTCATGACCGCCAAGGAGATTTCTACTGTTGGTTAAACACCACAATGATGGAAAACAGAAAAGTTCTAAACCCTGATGATCTTGATGGGTTTGACAAGAGGAAACTGCCATCCCCAGGATTCCAGGTCGAGGTTGTGCTGATAGACCATGATGGCTCTGTTCCACCAGCACCCAAAACTGAAACTGATGTCAAGAAATCAGATGGAGTCTCGGGTACTGGTTCTGCCTCAGTTGATGGGGCCAATGCCACTCCAAACCCAAGTAAAGACCCAGGAAGCAAGGATAAAGATGATGTGTTTTCAGATGGTGAGGTCGAAGAATCAGGGTCTTCAAAAAGCAGGCAGGCTCAAGCGGCTGAAGGAAGTGTTGCTGCTAAAACATCCAGTTCAGAAACTAAGACTAGTCCAGACCAAATTGCGAGTATAACACATAAGACTGAACAGGTCTCGCTTGGAGCCTCTGGCACCACACCTATCCACGATGCTGGTAAGCCAAAAAGTGATGCAGTTGGCGGAGTTACCTCAGGGCTTGAGGTCCCGAACCCAGAAAGGGTGAGTGAGTTCAAGGCAATGGCTGCTGATGCTTCTGTTTTTACATTTGGAGATGACGAGGACTATGAAAGTGAGTAA 1824 0.4501 MELESADSSNLPPPKAPEVQPSVATGSGPDNAARDAPSRLSSWAKNLKIPQSLAGGQDESPTGTTAKSSFARFTSGIGLRLSPKTPTSEDGPDGSPTTAQPGLFGTFTKGIVDSSRNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFLGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLITLFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIDYYNQKRCFDGKGLVLPSQIRYVKYFERILTYFNGENQPGRRCMLRGFRLHRCPYWIRPSITVSDHNGVLFSTKKHPRTKDLSPEEFWFSAPKKGIMVFALPGEPGLTPLAGDFKIHFHDRQGDFYCWLNTTMMENRKVLNPDDLDGFDKRKLPSPGFQVEVVLIDHDGSVPPAPKTETDVKKSDGVSGTGSASVDGANATPNPSKDPGSKDKDDVFSDGEVEESGSSKSRQAQAAEGSVAAKTSSSETKTSPDQIASITHKTEQVSLGASGTTPIHDAGKPKSDAVGGVTSGLEVPNPERVSEFKAMAADASVFTFGDDEDYESE* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0688 607 MobiDBLite consensus disorder prediction 488 507 - -
Vvi3g0688 607 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Vvi3g0688 607 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311|GO:0016791
Vvi3g0688 607 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Vvi3g0688 607 MobiDBLite consensus disorder prediction 44 72 - -
Vvi3g0688 607 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 315 IPR029021 -
Vvi3g0688 607 SMART PTEN_C2_2 319 447 IPR014020 -
Vvi3g0688 607 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 390 445 IPR035892 -
Vvi3g0688 607 CDD PTP_PTEN 145 310 IPR045101 GO:0016791
Vvi3g0688 607 MobiDBLite consensus disorder prediction 465 487 - -
Vvi3g0688 607 MobiDBLite consensus disorder prediction 450 576 - -
Vvi3g0688 607 Gene3D - 374 449 - -
Vvi3g0688 607 MobiDBLite consensus disorder prediction 1 102 - -
Vvi3g0688 607 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311|GO:0016791
Vvi3g0688 607 ProSiteProfiles C2 tensin-type domain profile. 321 448 IPR014020 -
Vvi3g0688 607 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 317 - -
Vvi3g0688 607 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 112 551 - -
Vvi3g0688 607 MobiDBLite consensus disorder prediction 508 553 - -
Vvi3g0688 607 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0688 Vvi-Chr3 5943312 5961632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0688 23 607 Protein tyrosine phosphatase (PTP) family AT3G19420 67.454 0.0 831
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0688 K01110 - vvi:100246943 1226.08