Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0549 ATGCAGTCAGAACCCGGCAACCACCAGCGGCCCACTGGCCCTCCACCTCCTCCGGAGAACCACCACCACCTCCAATGCCCGCGCTGCAATTCCACCAACACCAAGTTCTGCTACTACAACAACTATAACCTCTCCCAGCCCCGCCACTTCTGCAAATCATGCCGCCGTTACTGGACTCACGGTGGCGCCCTCCGCGACATCCCCGCCCGCGACAACGCCCCCAAGCGCTCCCGCTCCCGCTCCTCTCCGGTGACCCCGCCCCTGGCCTCTTATCCCCCGCAGCGCGTGCCTCCCGACCTTAATGTCGGCGCGTCTGGGAGTTTCACCAGGTTGCTGAACTCGCATGGATCCGAATTCTCGGGTCTGGGAGCGGAATACGGTCTCGGATCAGGTCTTCACGAGGTTGGTGATGGTGGCGCGTGGCAGATTGGGATTGGTGAAGAAGTGGAGCTGGTGGAGGGCAATGGCTTTACTTGGCCGGATATTCATGTTTCAGCTCCCGGAAGAATTCTGAAGGAATAA 522 0.6054 MQSEPGNHQRPTGPPPPPENHHHLQCPRCNSTNTKFCYYNNYNLSQPRHFCKSCRRYWTHGGALRDIPARDNAPKRSRSRSSPVTPPLASYPPQRVPPDLNVGASGSFTRLLNSHGSEFSGLGAEYGLGSGLHEVGDGGAWQIGIGEEVELVEGNGFTWPDIHVSAPGRILKE* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0549 173 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Vvi3g0549 173 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Vvi3g0549 173 Pfam Dof domain, zinc finger 23 75 IPR003851 GO:0003677|GO:0006355
Vvi3g0549 173 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 82 IPR045174 GO:0003700|GO:0006355
Vvi3g0549 173 MobiDBLite consensus disorder prediction 65 100 - -
Vvi3g0549 173 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0549 Vvi-Chr3 4802389 4802910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0549 17 97 C2C2-Dof Transcription Factor Family AT5G66940 59.770 1.32e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi3g0549 zf-Dof 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0549 - - vvi:104878796 328.561