Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0270 ATGGGTTCTGCTACGCTGCTTCTCGCCCTATCCTTCCTCTCGGTGCTCATCACTGCGCCGAGAGCTCAGGCCAGCTTCAAATGCAGCTCCGGCCCCACCTGTAACGCTCTCGTCGGCTACGTCTCCCCCAACACCACCACTCTATCCGCCATCCAGACTCTCTTCGGCGTCAAAAACTTTCGAACTCTACTCGGCGCCAACTCCCTCCCGGCCTCGACCCCAACGAACCAAAGCGTAGCCGCGAAGGACAAGATCGTCATCCCCTTCCGCTGCCGCTGCTCTAACGGAACCGGAATTTCGAACCACCGGCCGGTGTACACTGTGCAGAAGGACGACGGACTGTACCACATCGCGGCGGAGGTGTTCGCGGGACTGGTGACGTATCAGGAGATTCAGGCGGTGAACAACATTTCGGATGCGAATTTGATTGAAGTAGGGCAAGAGCTGTGGATTCCGCTGCCGTGTAGCTGCGATGAGGTGAATGAATCGAAGGTGGTGCACTACGGGCACGTGGTGGAATCCGGAAGCTCCGTGGCGGAGATCGCGGAGAAGTACGGAACCACCGAAGAGACGCTGTTGGAGCTCAACAACATTACAGATCCCAAGAATCTTAAGGCCGGTGATGTCCTTGATGTTCCCCTCAAAGCTTGTACTTCTGTGGTAAAGAACACCTCATTGGACTACCCATTACTCCTCTCTAATGGTACTTATGCCTACACTGCAAACAATTGTGTGAAGTGCCAGTGTTATTCTGCAAACAACTGGACATTACAATGTGAGCAATCCGGGCTTAATATAACAAATGGAACGTGCCCTAGCATGGAATGTGGGAGTAGTGGTTTATCCATTGGCAACTCCACATCTACCACTTGTAACAGGACAACCTGTGCCTATGCTGGTTACACCAACCAAACAATCTTCACAAGCCTTGTTGAGTCCACTTGTTCATCTACTAACAATGCTCCCAGCTATGCTTCGAAAATCACTCTGCCCAGTTGGAGATGGAACTTTGTTTTCATAGTAAGCCAATTGGTTATGCTTTATCTTCATCATTCCCAGTAG 1062 0.5151 MGSATLLLALSFLSVLITAPRAQASFKCSSGPTCNALVGYVSPNTTTLSAIQTLFGVKNFRTLLGANSLPASTPTNQSVAAKDKIVIPFRCRCSNGTGISNHRPVYTVQKDDGLYHIAAEVFAGLVTYQEIQAVNNISDANLIEVGQELWIPLPCSCDEVNESKVVHYGHVVESGSSVAEIAEKYGTTEETLLELNNITDPKNLKAGDVLDVPLKACTSVVKNTSLDYPLLLSNGTYAYTANNCVKCQCYSANNWTLQCEQSGLNITNGTCPSMECGSSGLSIGNSTSTTCNRTTCAYAGYTNQTIFTSLVESTCSSTNNAPSYASKITLPSWRWNFVFIVSQLVMLYLHHSQ* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0270 353 SUPERFAMILY LysM domain 105 153 IPR036779 -
Vvi3g0270 353 SMART LysM_2 169 213 IPR018392 -
Vvi3g0270 353 SMART LysM_2 105 152 IPR018392 -
Vvi3g0270 353 CDD LysM 105 151 IPR018392 -
Vvi3g0270 353 Gene3D LysM domain 101 160 IPR036779 -
Vvi3g0270 353 CDD LysM 170 212 IPR018392 -
Vvi3g0270 353 Gene3D LysM domain 161 225 IPR036779 -
Vvi3g0270 353 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 5 317 - -
Vvi3g0270 353 Pfam LysM domain 170 213 IPR018392 -
Vvi3g0270 353 Pfam LysM domain 106 152 IPR018392 -
Vvi3g0270 353 ProSiteProfiles LysM domain profile. 168 212 IPR018392 -
Vvi3g0270 353 SUPERFAMILY LysM domain 169 213 IPR036779 -
Vvi3g0270 353 ProSiteProfiles LysM domain profile. 104 151 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0270 Vvi-Chr3 2341949 2344352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0270 6 343 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 48.688 4.49e-101 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0270 - - vvi:100257272 704.901