Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0269 ATGGGTTCTGCTACTCTGCTTCTCGCCCTATTCTTCCTCTCCGTGCTCACCACTGTGCCCAAAGTTCAGGCAGCCTTCACCTGTAACTCCACCACCAGGTCCACCACCTGCAGCGCTCTCATCGACTACGTCTCCCCCAACACCACCACTCTATCTGCCATCCAGACTCTCTTCGACGTCAAAAACCTTCGAACTCTACTCGGCGCCAACTCCCTCCCGACCTCGACCTCGCCGAACCAAAGCGTAGCCGCGAAGGACAAGATCGTCATCCCCTTCCGCTGCCGCTGCTCTAACGGAACCGGAATTTCGAACCACCGGCCGGTGTACACTGTGCAGAAGGACGACGGACTGTACCACATCGCGGCGGAGGTGTTCGCGGGACTGGTTACGTATCAGGAGATTCAGGCGGTGAACAACATTTCGGATGCGAATTTGATTGAAGTAGGGCAAGAGCTATGGATTCCGCTGCCGTGTAGCTGCGATGAGGTGAATGGATCGAAGGTGGTGCACTACGGGCATGTGGTGGAAGCCGGGAGCTCCGTGGAGCTGATTGCGGAGGAGTACGGCACCACTCAGGAGACGTTGTTGAGGCTCAACGGCATTACAGATCCCAAGAATCTTCAGGCCGGTGCTGTTCTTGATGTTCCTCTCAAAGCTTGTACATCAATGGTAGCAAATAACAACTCATTAGACTATCCTTTACTTGTCGCTAATGGTACATATGTCTACACCGCCAACAGTTGTGTAATGTGCAAGTGTGATTCTGCGAACAACTGGACATTACAATGTGAGCCATCCCAGCTTAAGCTATCCAATAGAACGTGCCCTAGCATGCAATGTGAAGGTAGCAGTTTGTATATAGGCAACAGCACCTCTGCTGGTTGTAACCGAACGACCTGTGCCTATGCTGGTTACACCAGTCAAATGATCCTCACAACCCTTGTTGAGGGGAACGCTTGTTCAGCTAGTAATGATGCTCAAAAGATCGGTCTACAAGTCTGGAGCTGGGCCTTCCTTTTCATCTCGTCAATTGCTCTCGCTTGGTCTTCAATTTTTTCAGTAAGATCTCTGTAG 1074 0.5168 MGSATLLLALFFLSVLTTVPKVQAAFTCNSTTRSTTCSALIDYVSPNTTTLSAIQTLFDVKNLRTLLGANSLPTSTSPNQSVAAKDKIVIPFRCRCSNGTGISNHRPVYTVQKDDGLYHIAAEVFAGLVTYQEIQAVNNISDANLIEVGQELWIPLPCSCDEVNGSKVVHYGHVVEAGSSVELIAEEYGTTQETLLRLNGITDPKNLQAGAVLDVPLKACTSMVANNNSLDYPLLVANGTYVYTANSCVMCKCDSANNWTLQCEPSQLKLSNRTCPSMQCEGSSLYIGNSTSAGCNRTTCAYAGYTSQMILTTLVEGNACSASNDAQKIGLQVWSWAFLFISSIALAWSSIFSVRSL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0269 357 SUPERFAMILY LysM domain 108 156 IPR036779 -
Vvi3g0269 357 Gene3D LysM domain 162 229 IPR036779 -
Vvi3g0269 357 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 5 324 - -
Vvi3g0269 357 SMART LysM_2 108 155 IPR018392 -
Vvi3g0269 357 SMART LysM_2 172 216 IPR018392 -
Vvi3g0269 357 Gene3D LysM domain 104 161 IPR036779 -
Vvi3g0269 357 ProSiteProfiles LysM domain profile. 171 215 IPR018392 -
Vvi3g0269 357 CDD LysM 108 154 IPR018392 -
Vvi3g0269 357 CDD LysM 173 215 IPR018392 -
Vvi3g0269 357 ProSiteProfiles LysM domain profile. 107 154 IPR018392 -
Vvi3g0269 357 Pfam LysM domain 173 216 IPR018392 -
Vvi3g0269 357 Pfam LysM domain 109 155 IPR018392 -
Vvi3g0269 357 SUPERFAMILY LysM domain 172 216 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0269 Vvi-Chr3 2334630 2338229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0269 6 313 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 50.962 6.27e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0269 - - vvi:100262384 701.819