Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0242 ATGGATACTGCTCAGTGGCCACAGGAGATTGTGGTGAAACCACTAGAGGAGATAGTCACAAATACATGTCCAAAGCCTGCTTTGGAGAAGAGGGCAAGACCTCAGAAAGAGCAAGCTTTGAACTGCCCAAGGTGCAATTCAACCAACACTAAGTTCTGCTATTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTTTGCAAGGCTTGTAGAAGGTATTGGACTGAAGGTGGGTCTCTCAGAAATATTCCAGTTGGTGGGGGTTCAAGGAAGAACAAGAGATCATCATCTTCTTCTTCATCATCTTCATCTTCAGCTTCATCAAAGAAGCTTCCTGATCTGGTGCCACCAGGCTGCTCTCAGTCTTCTGCTCAAAACCCTAAGATCCATGAAGGCCAAGATCTCAACCTCTCCTTCCCAGCCGCTCAAGATTTCAGAAGTGTCTCTGAGTTCATGCAAATGCCCAGCATTGAAAACAGCAATAACAACACAAATAATAGCAGCAAGAGCCACATCACTTCTACTTCCTCTACTTCATCCCACCTCTCAGCTTTGGAGCTGCTCACTGGGATCACTTCAAGGGGGTTGAATTCCTTCATGCCCATGCCAATTCCTGATCCAAACACAGTTTACACAACTGGGTTTCCTATGCAGGAGTTCAAACCGACTCTTAATTTTTCTCTGGATGGGCTTGGGAGTGGGTATGGTAGCATCCAGGGAGTTCAAGGGAGCAGTAGTGGGAGGCTGTTGTTTCCATTTGAAGATTTGAAACAGGTCTCAAGCACAGCTGATCATATTGAGCAAACTAGAGAGCAAGGAGATTCAACTGGGTACTGGACTGGGATGTTAGGTGGAGGATCATGGTAA 867 0.4602 MDTAQWPQEIVVKPLEEIVTNTCPKPALEKRARPQKEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNIPVGGGSRKNKRSSSSSSSSSSSASSKKLPDLVPPGCSQSSAQNPKIHEGQDLNLSFPAAQDFRSVSEFMQMPSIENSNNNTNNSSKSHITSTSSTSSHLSALELLTGITSRGLNSFMPMPIPDPNTVYTTGFPMQEFKPTLNFSLDGLGSGYGSIQGVQGSSSGRLLFPFEDLKQVSSTADHIEQTREQGDSTGYWTGMLGGGSW* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0242 288 MobiDBLite consensus disorder prediction 89 110 - -
Vvi2g0242 288 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Vvi2g0242 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 174 IPR045174 GO:0003700|GO:0006355
Vvi2g0242 288 MobiDBLite consensus disorder prediction 81 127 - -
Vvi2g0242 288 MobiDBLite consensus disorder prediction 156 177 - -
Vvi2g0242 288 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Vvi2g0242 288 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0242 Vvi-Chr2 2012894 2014219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0242 1 288 C2C2-Dof Transcription Factor Family AT4G24060 46.221 4.31e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi2g0242 zf-Dof 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0242 - - vvi:100266812 521.931