Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1115 ATGGCCGTGATAAAATCTGGGAGTGGGGCTATGAGCTTCACCAAGGCTCTGGCTGTTTCTTTGATATCTCTGCCTTTTCTCTTCACACTCTTCGTTCTCTACCGGAACCCACCTTCTGATCCAACCCCAGATTTCAGAGAAGCTAGGGTTTTGGACGTGCCACCCAGGATTGTTAATGCGTTGAAACTGGGTACGAAAACAGTATTCAATGGTCCAGAAGATAATTCCTCTCAACCTGCTGACATGTCTAAAGACAGTCTGCTTGGTGGGCTTCTTGCTGCTGGATTTGGCGAAAAATCTTGCTTAAGCAGGTACCAGTCTGCCTTGTATCGAAAAATTTCACCTTATAAGCCTTCTTCCTATCTTCTTTCCAGATTGCGGAAGTATGAAGACCTCCATAAACATTGTGGACCCCATACCAAATCCTACAGGAAAACCATAAAACTACTCAAGTCTGGCCACAGTGTTGGCCCAACAGATTGTAACTATGTTGTGTGGATATCTTACAGTGGCTTAGGGAACAGGATCCTCACCCTGGCTTCTGCATTCCTTTATGCTCTTCTCACAAACCGTGTCCTGCTTGTTGACCGGGGAAAAGACATGGCTGATCTATTCTGTGAGCCATTTCCTGAAAAATCATGGTTACTGCCCCTGGACTTTCCCCTACTGCCTAAATTCAACAGCATTAACAAAGAATCTCCTCATTGTTTTGGGAAGATGCTGAAGAATAATATCATAAATTCCTCAACAGAACAACCGCCACCATTTTTATATATCTACCTGAGTCACGATTATGGTGATCATGATAAGCTTTTCTTCTGTGATCAGGAACAAACCCTTCTTGGGAAAGTCCCTTGGTTGATCATGAAGACTAATAACTACTTTGTCCCATCTCTCTTCTTGATGCCTTCTTTTGAACAAGAACTAAGCAAATTATTCCCAGAAAAGGAAACTACTTTCCATCACTTGGGTCGGTATCTTTTCCACCCTTCAAATCAAGTATGGGGACTGATCACAAGGTTCTATAAAGCTTACTTGGCTGAATCAAATGAGAGGATTGGCATCCAAATAAGGACTTTTGACTCTGGAACTGCTCCTTTCCAATATGTGATTGATCAAATCATGGCATGCACTCTAAAGGAGAAACTGCTGCCTGAAGTCAATAGACAAGAAACTTTTGTTACCCCAGCTGAAAACCAGAAATCAATAGCTGTTCTAATGACATCTTTAAATTCTGGGTACTCTGAGGCTGTGAGGAACATGTATTGGGAGCAGTCAGCCATGAGTGGGGAGGTGGTCAGCGTATACCAGCCAAGCCATGAGGAAGTCCAACAGAGTGAGAAGCAGGGGCACAACAGGAAGGCATGGGCAGAAATGTATCTCCTAAGTACGACTGAGGCATTGATAACCAGCGCATGGTCAACCTTTGGCTATGTGGCTCAGGGTCTTGGAGGTGTGACGCCTTGGATTCTGTACAAGCCTCAAAATCGGACAGCTCCTGATCCACCTTGTGGCAGGGCAATGTCAATGGAGCCATGCTTTCATGCCCCTCCCTTCTATGACTGTAAGGCGAAGACAGGAGTCGATACTGGTGCGCTTGTTCCTCATGTAAGACACTGTGAAGACATGAGCTGGGGCCTCAAGCTGGTTGGTAGACATAGAGAGTTGTAG 1671 0.4488 MAVIKSGSGAMSFTKALAVSLISLPFLFTLFVLYRNPPSDPTPDFREARVLDVPPRIVNALKLGTKTVFNGPEDNSSQPADMSKDSLLGGLLAAGFGEKSCLSRYQSALYRKISPYKPSSYLLSRLRKYEDLHKHCGPHTKSYRKTIKLLKSGHSVGPTDCNYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGKDMADLFCEPFPEKSWLLPLDFPLLPKFNSINKESPHCFGKMLKNNIINSSTEQPPPFLYIYLSHDYGDHDKLFFCDQEQTLLGKVPWLIMKTNNYFVPSLFLMPSFEQELSKLFPEKETTFHHLGRYLFHPSNQVWGLITRFYKAYLAESNERIGIQIRTFDSGTAPFQYVIDQIMACTLKEKLLPEVNRQETFVTPAENQKSIAVLMTSLNSGYSEAVRNMYWEQSAMSGEVVSVYQPSHEEVQQSEKQGHNRKAWAEMYLLSTTEALITSAWSTFGYVAQGLGGVTPWILYKPQNRTAPDPPCGRAMSMEPCFHAPPFYDCKAKTGVDTGALVPHVRHCEDMSWGLKLVGRHREL* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1115 556 Gene3D - 159 209 - -
Vvi1g1115 556 FunFam Galactoside 2-alpha-L-fucosyltransferase 159 210 - -
Vvi1g1115 556 PANTHER FUCOSYLTRANSFERASE 2-RELATED 39 550 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vvi1g1115 556 Pfam Xyloglucan fucosyltransferase 75 523 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1115 Vvi-Chr1 14246016 14249230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1115 8 550 Xyloglucan Fucosyltransferase1 AT2G03220 61.243 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1115 K13681 - vvi:100243671 1118.22