Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1065 ATGTTGGATTTCAAGGACCCGGCGATTAAGCTCTTTGGCAAGACCATCTCATTGCCTCTCAACCCCCACCTTTCTCCTACTTCCCCACCTCCCCCTCCTCTTTCTTCCACCACTTCCTTCCCGGACGACACTTCTCAGGGACTTCAACCCCCCTCACAGGACCAGAAACCTTTGGAAGGACAGGAATTTGAGGGTAAAGAGGAAGATGGCACCTCACGTCAGACATCAGAGGAGTTAAAAGATCCTACAGCATCGCCGGGGGTAAGTGAGAACCCTGAAACACCCTCTGCTGACAAAGAGACTTCCAAGGATGGAGAACAGAGTGAGATAAGTGGCTCACAAGAAAAAACTTTGAAGAAGCCTGACAAAATACTACCATGTCCGCGTTGTAATAGCATGGACACCAAGTTCTGCTACTACAACAACTACAATGTCAACCAGCCCCGCCACTTCTGCAAGAACTGTCAGAGATATTGGACTGCTGGAGGAACCATGAGAAATGTGCCAGTGGGTGCCGGTCGTCGCAAGAACAAGAACTCCTCTGCTTCACAGTATCGTCACATTATGGTGTCTGAAGCTCTTCAGACTGCTCGAGCAAGCGCTGCAAATGGAATCCACCATCCCGCTTTGGGGAACAATGGCACTGTCCTTAATTTTGGCTCAGATGGTCCTCTTTGTGAATCCGTGGCTTCTGTACTGAATCTTGCAGATAAAACACAAAACTGTATGCAGAATGGTTTTCATAAATCTGAACAGAGAATTCCTGCTTCTTGTGGAGGGGGTGAAAATGGGGATGACCACTCTTCTATTACGTTGACAAATTCAGCAGAAAAGGGAAACATTGCTGGTTTAGAGCCCGTGGTAAAGAATTTTCAAGCCTTTTCTCCTCATGTGCCATGCTTCCCAGGGGCTTCTTGGTCCTATCCATGGAATCCTGCTCAGTGGAGCTCTAAAATCCCCCCTCCCGCCTTTTGCCCTCCGGGATTTCCTATATCATTCTACCCTGCACCAGCTTACTGGGGTTGTACTGTACCTGGCTCTTGGAATATACCATGTATTCCTCCAACGTCGTCTTCTCCTATCCACTCTGCCTTGGCCACTAATCATAACTCTCCAACCTTAGGGAAACATGCCAGGGATGGAGAGGTCCTTAATCCAGCCAACCCAGGGAAAGAAGATCACCAGAAAGAGAACAATCCAGAAAGAGGTGTTTGGATTCCAAAGACACTGAGGATTGACGATCCCAATGAAGCTGCTAAGAGCTCTATATGGACAACACTTGGGATTAAGAATGATGGGAGTAATGGGGGAAGTCTCTTGAAGGCCTTTCAATCAAAGGGTGACGAGAAAAAGCGCATAGCTGAAATGTCTCCGGTGTTGCAAGCCAACCCTGCAGCCTTGTCCAGATCACTCAACTTCCATGAGAGAGCCTAA 1434 0.4812 MLDFKDPAIKLFGKTISLPLNPHLSPTSPPPPPLSSTTSFPDDTSQGLQPPSQDQKPLEGQEFEGKEEDGTSRQTSEELKDPTASPGVSENPETPSADKETSKDGEQSEISGSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSASQYRHIMVSEALQTARASAANGIHHPALGNNGTVLNFGSDGPLCESVASVLNLADKTQNCMQNGFHKSEQRIPASCGGGENGDDHSSITLTNSAEKGNIAGLEPVVKNFQAFSPHVPCFPGASWSYPWNPAQWSSKIPPPAFCPPGFPISFYPAPAYWGCTVPGSWNIPCIPPTSSSPIHSALATNHNSPTLGKHARDGEVLNPANPGKEDHQKENNPERGVWIPKTLRIDDPNEAAKSSIWTTLGIKNDGSNGGSLLKAFQSKGDEKKRIAEMSPVLQANPAALSRSLNFHERA* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1065 477 PANTHER CYCLIC DOF FACTOR 2 5 476 IPR045174 GO:0003700|GO:0006355
Vvi1g1065 477 MobiDBLite consensus disorder prediction 38 56 - -
Vvi1g1065 477 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Vvi1g1065 477 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Vvi1g1065 477 MobiDBLite consensus disorder prediction 23 37 - -
Vvi1g1065 477 MobiDBLite consensus disorder prediction 16 125 - -
Vvi1g1065 477 MobiDBLite consensus disorder prediction 96 123 - -
Vvi1g1065 477 MobiDBLite consensus disorder prediction 386 400 - -
Vvi1g1065 477 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
Vvi1g1065 477 MobiDBLite consensus disorder prediction 77 95 - -
Vvi1g1065 477 MobiDBLite consensus disorder prediction 368 400 - -
Vvi1g1065 477 MobiDBLite consensus disorder prediction 59 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1065 Vvi-Chr1 12212247 12215017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1065 4 475 C2C2-Dof Transcription Factor Family AT5G39660 43.110 9.93e-106 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi1g1065 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1065 - - vvi:100265355 937.947