Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0645 ATGGTTCTCTCAGTTGTTCAGGGGTGCGAAGAAGAATCATCCAGCGTTGTTAGCTCAGTTTTTGCATCAAGATATGTTCAGGACCCACCTCCAAGGTATAAGATGCCGGAGAAATCGATTCCAAAAGAAGCAGCATACCAGATAGTACACGATGAATTACTATTAGATGGTCTTCCCAGGCTTAACTTGGCTACATTCGTCACCACATGGATGGAACCTGAGTGTGATAAGCTGATGGCAGAAGCCATCAACAAGAATTATGTAGACATGGATGAATACCCAGTCACAACTGAGCTTCAGAATCGGTGCGTGAACATGATTGCAAAACTTTTCAACGCTCCATCAGCTGATCAGACAAAACAAGCAGTTGGAGTTGGGACAGTGGGATCCTCAGAGGCAATGATGTTGGCCGGATTGGCATTCAAGAAGAAGTGGCAAAACAAGAGAAAGGCGCAAAAGAAACCTTTTGACAAGCCTAATATTGTTACTGGTGCCAATGTTCAGGTTTGTTGGGAGAAATTTGCAAGATACTTTGAAGTGGAGTTGAAGGAAGTGAAACTAAGAGAAGGGTACTATGTGATGGACCCGGTGAAAGCGGTGGAGATGGTGGATGAGAACACCATCTGTGTTGCAGCTATCCTGGGTTCTACCTTCAATGGTGAATTTGAAGATGTCAAGCTCTTGAACACTCTCCTTACTCAAAAGAACAAGAGAACTGGGTGGGACACCCCAATTCATGTGGATGCAGCCAGTGGAGGATTTGTGGCTCCTTTTTTATACCCAGAACTGGAATGGGATTTCCGGCTACCTTTGGTGAAGAGCATCAATGTCAGCGGCCACAAATACGGCCTTGTCTACGCTGGAGTTGGGTGGGCCATTTGGAGGAGCAAAGAGGAATTGCCTGAAGAACTCATCTTCCACATAAACTACCTTGGTGGTGATGAACCCACCTTCACCCTCAACTTCTCCAAGGGGTCCAGTCAGGTTATTGCACAATACTACCAGTTCTTGCGCATGGGCTTTGAGGGATACAAGAAAGTGATGAGCAACTGCATGGAAAGTGCGAGGATACTTCGAGAGGGATTGGAGAAAACAGGGCGTTTCCAAATAATTTCAAAGGAGAAAGGAGTACCCGTCGTGGCCTTTGCATTCAAGGGTAACGATCGTAAAAACTTGGCATTCGGATTATCAAAAGCCTTGAGGAACTACGGGTGGATTGTTCCAGCTTACACGATGCCAGCCAATGCGGAGAATGTCACGGTCCTTCGGGTGGTTGTTCGTGAGGACTTTGGGCGGCAGCTGGTTGAGAAGTTGCTTTTCCACATTGGAGTTGCGTTGAAGGAGGTCACGGATGCAGCAAGTAGTGTTCCAATGATAAGACTTACAGTGGAAATGAAGGCAGATGAGAGTGAAATGAATGCAGGTGAGGGAACTCTACACATACCGGCGGCTTCAGTGCACTGGAAGCATGATAAACCCGAAACTGTTGACACTCAAGTGCCCATAATGGATGGTAAAACTAAAGGGGTTTGCTGA 1536 0.4642 MVLSVVQGCEEESSSVVSSVFASRYVQDPPPRYKMPEKSIPKEAAYQIVHDELLLDGLPRLNLATFVTTWMEPECDKLMAEAINKNYVDMDEYPVTTELQNRCVNMIAKLFNAPSADQTKQAVGVGTVGSSEAMMLAGLAFKKKWQNKRKAQKKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPVKAVEMVDENTICVAAILGSTFNGEFEDVKLLNTLLTQKNKRTGWDTPIHVDAASGGFVAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWAIWRSKEELPEELIFHINYLGGDEPTFTLNFSKGSSQVIAQYYQFLRMGFEGYKKVMSNCMESARILREGLEKTGRFQIISKEKGVPVVAFAFKGNDRKNLAFGLSKALRNYGWIVPAYTMPANAENVTVLRVVVREDFGRQLVEKLLFHIGVALKEVTDAASSVPMIRLTVEMKADESEMNAGEGTLHIPAASVHWKHDKPETVDTQVPIMDGKTKGVC* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0645 511 FunFam Glutamate decarboxylase 69 364 - -
Vvi1g0645 511 PANTHER GLUTAMATE DECARBOXYLASE 1 483 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vvi1g0645 511 NCBIfam glutamate decarboxylase 19 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vvi1g0645 511 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 385 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vvi1g0645 511 FunFam Glutamate decarboxylase 6 68 - -
Vvi1g0645 511 Gene3D - 1 68 - -
Vvi1g0645 511 Gene3D - 365 452 - -
Vvi1g0645 511 Gene3D - 69 364 IPR015421 GO:0003824
Vvi1g0645 511 FunFam Glutamate decarboxylase 365 453 - -
Vvi1g0645 511 SUPERFAMILY PLP-dependent transferases 16 443 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0645 Vvi-Chr1 6440902 6443147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0645 12 456 Calmodulin-binding Proteins AT2G02010 76.404 0.0 727