Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0644 ATGGTTCTCTCAAAAACTGCTTCTGAGTCGGATGTCTCCGTGCACTCCACCTTTGCCTCTCGCTACGTGAAAGCTTCGCTTCCGAGGTTCAAGTTGCCGGAGAACTCGATCCCGAAGGAGGCGGCGTACCAGATCATAAACGACGAACTGATGCTTGATGGCAATCCTAGGCTAAACCTGGCTTCGTTTGTGACTACTTGGATGGAGCCTGAATGTGATAAGCTTATGATGGCTGCCATAAACAAGAACTATGTGGACATGGATGAATACCCGGTTACCACTGAGCTTCAGAACCGATGCGTGAACATCATAGCCCATCTATTCAATGCTCCATTGGAAGACTCAGAGGCTGCCGTGGGAGTGGGGACGGTGGGGTCCTCCGAGGCGATAATGCTAGCAGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAAGAGAAAGGCTGAGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGGTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGGGACGGCTACTATGTAATGGACCCAGAGAAAGCTGTGGAAATGGTGGATGAAAACACCATCTGTGTTGCGGCAATCTTGGGCTCAACTCTCAATGGAGAATTTGAAGATGTTAAGCTCTTGAACGATCTCTTGGTCGAAAAGAACAAGCAAACAGGATGGGATACCCCAATTCATGTTGATGCAGCTAGTGGTGGATTCATTGCACCATTCCTTTATCCGGAACTGGAGTGGGACTTCCGCCTTCCATTGGTGAAGAGCATTAATGTTAGTGGCCACAAGTATGGCCTCGTATATGCTGGAATTGGGTGGGTTGTTTGGAGGAGCAAAGAGGACTTGCCCGAAGAACTTATCTTTCACATAAACTACCTTGGAGCCGATCAACCAACCTTCACTCTCAATTTCTCCAAAGGTTCTAGTCAAGTCATCGCCCAGTATTATCAACTAATTCGCTTGGGTTTCGAGGGATACCGAAATGTGATGGAGAATTGCCAGGAAAATGCTATGGCGCTGAAAGAAGGACTGGAGAAGACTGGGCGCTTTAACATCATCTCCAAGGACAATGGGGTCCCTCTGGTGGCCTTCTCTCTCAAGGACAATTCATGCCATGATGAGTTTGAGGTTGCAGACATGCTTCGCCGCTTCGGCTGGATTGTGCCTGCCTACACCATGCCACCAGATGCTCAGCATGTTACAGTGCTCCGAGTTGTGGTTAGGGAAGACTTTTCACGCACCCTTGCTGAGCGCCTTGTATTTGACATCACCAAGGTGCTCCATGAACTTGATATGCTCCCAGCAAAGCTCAGTGCCAAGATTTCTGTCGAAGAGAAAAAGCAAAATGGCACAATTCTGAAGAAATCCGTGATCGAGACACAGAGGGAAATCACCGATGCTTGGAAGAAATTTGTCATGGCCAAGAAAACGAACGGCGTTTGTTAG 1488 0.4839 MVLSKTASESDVSVHSTFASRYVKASLPRFKLPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIAHLFNAPLEDSEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCQENAMALKEGLEKTGRFNIISKDNGVPLVAFSLKDNSCHDEFEVADMLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTLAERLVFDITKVLHELDMLPAKLSAKISVEEKKQNGTILKKSVIETQREITDAWKKFVMAKKTNGVC* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0644 495 Gene3D - 66 360 IPR015421 GO:0003824
Vvi1g0644 495 Gene3D - 1 65 - -
Vvi1g0644 495 FunFam Glutamate decarboxylase 66 360 - -
Vvi1g0644 495 PANTHER GLUTAMATE DECARBOXYLASE 1 495 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vvi1g0644 495 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vvi1g0644 495 CDD DOPA_deC_like 59 439 - -
Vvi1g0644 495 Gene3D - 361 448 - -
Vvi1g0644 495 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Vvi1g0644 495 FunFam Glutamate decarboxylase 361 448 - -
Vvi1g0644 495 FunFam Glutamate decarboxylase 1 65 - -
Vvi1g0644 495 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0644 Vvi-Chr1 6433480 6435929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0644 1 495 Calmodulin-binding Proteins AT5G17330 84.661 0.0 897