Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0643 ATGGCTTCCAACATGCCAACTTGCTTTGCAGCAGTCATGGCGTTGATGTTAGTGTCCCAAGCTTTTGTTCAGGAAGCCAATGGGGCAGGTGAGTGTGGGAAGACCCCCATTCAATCTGCAGCTGCTAGCTTGAGCTCTTGCTTGAGCGCAGCAGGGAACGCCAAGGCCAAGGTTCCCCCTACTTGCTGCACTAAAGTTACTGCATTAATCAACACCGCCCCCAAATGCCTCTGTGCTGTTGTGCTTTCGCCTTTGGCCAAAAAGGCTGGAATCAAGCCTGCAATTGCCATTACCATTCCCAAGCGATGCAACATCAAAAACAGGCCTGTGGGCAAGAAGTGTGGAAGTTACATCATCCCATGA 363 0.5096 MASNMPTCFAAVMALMLVSQAFVQEANGAGECGKTPIQSAAASLSSCLSAAGNAKAKVPPTCCTKVTALINTAPKCLCAVVLSPLAKKAGIKPAIAITIPKRCNIKNRPVGKKCGSYIIP* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0643 120 CDD AAI_LTSS 44 105 - -
Vvi1g0643 120 Gene3D - 37 110 IPR036312 -
Vvi1g0643 120 SMART aai_6 32 114 IPR016140 -
Vvi1g0643 120 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 40 109 IPR036312 -
Vvi1g0643 120 Pfam Probable lipid transfer 13 114 IPR016140 -
Vvi1g0643 120 PANTHER LIPID BINDING PROTEIN-RELATED 10 115 IPR039265 GO:0005504|GO:0009627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0643 Vvi-Chr1 6421050 6421682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0643 9 120 Acyl Lipid Metabolism Gene Families AT2G37870 63.717 1.06e-43 137