LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0639	ATGGATTCAAACTCAAAGGTTTCTCATTCCAGCGGGCATGAGGGTGCGAAGGATCATAGTAGGCTTGGGAAATTTTTTGAAAAAAGTATAATTGCCAGAAGGGTGTTACTTTTTATAGCTATGTTAGGCACGTGCATGCTAATTGGTGATGGCATACTTACTCCTGCAATCTCAGTCTTGTCAGCAATGGATGGGATACGTGCACCTTTCCCTTCTGTCAGTAAATCTTTGGTGGAAGCTATTTCTGCAGCAGTCCTAATTCTTCTGTTCCTGATGCAAAAGTTTGGAACCTCACGAGTGAGCTTCCTTTTTTCCCCCATCATGGGTGCATGGACCATCACGACTCCACTTGTAGGAATTTATAGCATTGTACAACATTACCCAAGTATATTCAAGGCTTTGTCACCGCATTACATCTTCCATTTCTTTTGGAGAAGAGGAAAAGATGGCTGGCTGTTGCTTGGTGGCTCTGAAGCGTTGTTTGCGGATCTCGGACATTTCAGCAGGCCCTCAATTCAGATTGCCTTTTTTCTCACCATATATCCATCTCTGGTTTTGACATATGCCGGGCAAACAGCATACCTGATCAAGAACCCCAATGATCATGATGATGGATTTTACAAGTTTATACCAACTCCAATCTACTGGCCAATTTTCATCATAGCCACATCGGCTGCTATTGTTGCAAGCCAGTCCCTAATATCAGCAACCTTTTCTATTATCAAGCAATCTGTAGTACTGGATTATTTTCCCCGGGTGAAAGTGGTGCACACCTCCCCTAGCAAAGAAGGCGAGGTTTACTCCCCAGAAATAAACTATATCCTGATGATTCTTTGTGTTCTTGTGATACTAATTTTTGGGGATGGAAAAGATATCGGAAATGCTTTTGGTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGGTCATGATCATGATATGGAGAACTCCACCAGTCCTGGTTGCCCTCTACTTCTTCGTTTTTTTTGTGATGGAGGGTGTTTATGTGAGTGCTGTCTTCACAAAATTTCTAGAGGGAGGATGGATTCCTTTTGCCATTTCCTTGATACTTGCCTTCATAATGTTTGGGTGGTTCTATGGGAGGCAGAGAAAAATAGAATACGAGTTGACCCACAAGATAAGCTTGGACAGACTTGAACAGCTCTTATCTGACACAGGTGTCCAGAGGGTTCCTGGATTGTGCTTCTTTTACACCAATATTCAAGATGGTCTGACTCCAGTTCTGGGACATTACATAAAGAACATGAAATCCCTTCACAAGGTCACCATTTTCACTACCCTGAGTTACTTGTTGGTTCCAAAGGTTGCTCAACATGAGAGGATTGTCGTCGACAAACTGGGCCTCAAAGGGGTGTATGGGTGTGTGATTCAATATGGCTATGCAGATTCTCTTAATCTTGAAGGTGATGATTTTGTAAGTCTAGTGACCAATAGCTTGCAGGCTTATATACAGAAAGACACTGATCCGGAGATTGAAGAAGAGATTTTGGACTTGGAAGAGGCAAGGCGGTCTGGAGTGGTTCATATTCGAGGCAAGGCGAGGTTTTATACAGGCAAGAGTTGTAGATGGTTTGATAGAATCATGCTCGCATTTTATGAAGTTCTGCACAGTAATTGTAGGACTGCACTGCCTGCTTTGGGGGTTCCTCTGCCTCAGCGCATTGAAGTTGGAATGCTTTATGAGGCTTGA	1725	0.4284	MDSNSKVSHSSGHEGAKDHSRLGKFFEKSIIARRVLLFIAMLGTCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEAISAAVLILLFLMQKFGTSRVSFLFSPIMGAWTITTPLVGIYSIVQHYPSIFKALSPHYIFHFFWRRGKDGWLLLGGSEALFADLGHFSRPSIQIAFFLTIYPSLVLTYAGQTAYLIKNPNDHDDGFYKFIPTPIYWPIFIIATSAAIVASQSLISATFSIIKQSVVLDYFPRVKVVHTSPSKEGEVYSPEINYILMILCVLVILIFGDGKDIGNAFGVVVSLVMLITTILLTLVMIMIWRTPPVLVALYFFVFFVMEGVYVSAVFTKFLEGGWIPFAISLILAFIMFGWFYGRQRKIEYELTHKISLDRLEQLLSDTGVQRVPGLCFFYTNIQDGLTPVLGHYIKNMKSLHKVTIFTTLSYLLVPKVAQHERIVVDKLGLKGVYGCVIQYGYADSLNLEGDDFVSLVTNSLQAYIQKDTDPEIEEEILDLEEARRSGVVHIRGKARFYTGKSCRWFDRIMLAFYEVLHSNCRTALPALGVPLPQRIEVGMLYEA*	575

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0639	574	NCBIfam	potassium uptake protein	15	573	IPR003855	GO:0015079\|GO:0016020\|GO:0071805
	Vvi1g0639	574	PANTHER	OSMOTIC STRESS POTASSIUM TRANSPORTER	13	573	IPR003855	GO:0015079\|GO:0016020\|GO:0071805
	Vvi1g0639	574	Pfam	K+ potassium transporter	29	474	IPR003855	GO:0015079\|GO:0016020\|GO:0071805

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0639	Vvi-Chr1	6392081	6395576	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0639	8	572	Inorganic Solute Cotransporters	AT2G30070	38.567	8.57e-147	434