Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0624 ATGGAGAGCAACCCCTTTCAGCTTTTCTTTCATCGTGTTCTGAAGCTGCTGCTGCTGCTCTGTGCGTTGGTTTCTGGGATTGAGCTACGAGGGGTGTCCGGGTCGACGAAGACGGATGGGGAGGCACTTCTTGCGTTCAAGAAGATGGTTCACAAGGACCCGCATGGAGTTTTGGAGGGGTGGCAGGCCAATAAGAGTCCATGCACCTGGTATGGGGTTTCCTGCTCTCTGGGACGTGTCACTCAGCTTGATCTCAACGGGTCTAAACTCGAGGGAACTCTCTCTTTCTACCCCTTGGCTTCTTTAGATATGTTGTCTGTTTTGAGCCTTTCTGGTAATCTCTTTTATGTGAATTCTACTGGTTTGCTTCAACTTCCCGTTGGATTGACACAGCTCGACCTGTCGTCAGCCGGGCTGGTTGGTTTAGTTCCTGAAAATCTTTTCTCCAAGCTTCCGAATCTTGTTTCCGCCACTCTTGCTTTAAACAATTTAACGGGGTCTCTCCCTGATGATCTCTTATTGAATTCCGATAAGCTGCAGGTTCTGGACCTCTCTTATAACAATCTAACGGGTTCCATCTCGGGCCTGAAAATTGAGAATTCTTGCACTTCCTTGGTGGTGTTGGATCTGTCGGGAAACAATCTAATGGATTCACTTCCATCCTCGATTTCCAACTGCACCAGTCTCAACACTTTGAATTTGTCCTACAATAACTTGACGGGAGAGATCCCGCCATCTTTCGGCGGCCTCAAAAACCTACAAAGATTGGATCTCTCCCGCAATCGTCTCACTGGTTGGATGCCTTCCGAGTTGGGAAATACGTGTGGGTCACTCCAAGAAATCGACCTTTCCAATAACAACATTACGGGTCTCATTCCAGCGTCTTTCTCCTCTTGCTCTTGGCTGCGACTTCTTAATTTGGCCAACAACAATATTTCCGGTCCCTTCCCAGATTCCATCCTCCAGAGCCTTGCCTCATTGGAGACCTTGTTGTTGAGCTACAATAACATCTCCGGAGCATTTCCTGCTTCCATTTCATCTTGCCAAAACCTAAAGGTCGTGGATTTCAGTTCTAATAAGCTTTCTGGCTTCATCCCACCAGATATATGTCCAGGTGCTGCTTCACTAGAAGAGCTGAGAATCCCGGACAATTTGATCAGTGGAGAAATTCCAGCTGAATTGTCACAGTGTTCAAGGCTGAAGACTATTGATTTCAGCTTAAACTACCTGAAAGGCCCAATTCCACCACAGATTGGGAGGCTTGAGAATCTTGAGCAGCTAATAGCTTGGTTCAATGCCTTGGATGGAGAAATCCCACCAGAGTTGGGAAAATGCAGGAACCTTAAGGATCTTATCCTTAACAATAACAACCTTGGTGGTAAAATCCCATCTGAATTGTTCAATTGCGGTAATCTGGAATGGATTTCTCTCACAAGCAATGGACTCACTGGCCAAATTCCACCAGAATTCGGCCTTTTGAGTAGACTGGCGGTTCTGCAGCTTGGCAACAACAGCTTGAGTGGTCAGATACCAAGAGAGCTAGCAAATTGCAGCAGCTTGGTATGGTTGGACTTGAATAGCAACAGACTTACCGGGGAAATCCCGCCTCGACTTGGCAGGCAGCTTGGGGCAAAATCATTAAGTGGAATTCTCTCTGGAAACACCCTGGCATTTGTGCGGAATTTGGGGAATTCATGTAAAGGAGTTGGAGGCTTGTTGGAATTTGCTGGAATTCGTCCTGAACGGCTGTTACAAATCCCAACATTGAAGACTTGTGATTTTACAAGAATGTATTCTGGTGCAGTCCTAAGCCTCTTTACAAAGTACCAGACTTTAGAGTATCTCGATCTCTCCTACAACGAGCTTCGGGGAAAAATACCAGATGAAATTGGGGGAATGGTGGCTCTACAAGTTCTTGAATTGAGCCACAACCAGCTGTCTGGAGAGATCCCCTCATCACTTGGGCAGCTCAGAAACTTAGGTGTATTTGATGCATCACATAACAGATTGCAAGGTCATATCCCAGACTCATTCTCAAATCTCTCTTTCTTAGTCCAAATAGATCTATCCTATAATGAATTAACAGGGCAAATTCCAACAAGGGGGCAACTTAGCACACTTCCTGCAAGCCAGTATGCAAACAACCCAGGGCTCTGTGGAGTTCCATTGCCTGAATGCCAAAATGATGACAATCAACCAGTAACAGTTATAGATAACACTGCTGGGAAAGGAGGCAAAAGACCTGCCACTGCATCCTGGGCCAACAGCATTGTCTTGGGTGTTCTCATTTCCATTGCTTCTATCTGCATTCTGATTGTCTGGGCAATTGCTATGCGTGCAAGGCGGAAGGAGGCAGAAGAAGTCAAGATGCTAAATAGCTTGCAAGCATGCCATGCAGCCACAACATGGAAGATTGACAAGGAGAAAGAGCCACTGAGCATTAATGTGGCGACTTTTCAGAGGCAGCTAAGGAAACTCAGGTTCTCACAACTCATTGAGGCTACCAATGGCTTCTCAGCAGCAAGTCTTATTGGGTGTGGTGGGTTCGGGGAAGTGTTCAAGGCAACATTGAAAGATGGGTCAAGCGTGGCAATCAAGAAACTCATAAGATTGAGTTGCCAAGGAGACCGAGAATTTATGGCTGAGATGGAAACTCTGGGGAAGATCAAGCATAGGAATCTGGTTCCTCTGTTGGGCTACTGCAAGGTTGGAGAAGAGAGACTCCTTGTCTATGAATTCATGGAGTATGGAAGCTTAGAAGAAATGCTACATGGAAAGGCAAAGGCACGAGATCGACGTATTCTAACATGGGAGGAAAGGAAAAAAATTGCAAGAGGCGCAGCTAAAGGACTCTGTTTCTTACACCACAATTGTATACCACACATTATACACCGAGACATGAAGTCAAGCAATGTGCTACTGGACCATGAAATGGAAGCTAGAGTTTCTGATTTTGGCATGGCAAGGCTAATAAGTGCGCTTGACACACATCTAAGTGTGAGCACTCTTGCAGGCACACCTGGGTATGTGCCTCCAGAATACTATCAAAGCTTCCGCTGCACGGCTAAAGGAGATGTCTATTCTTTTGGAGTTGTTCTCTTGGAACTCTTGACGGGGAAGCGACCCACTGATAAGGAGGATTTTGGAGACACCAACTTGGTGGGGTGGGTGAAAATGAAAGTGAAAGAAGGAAAAGGAATGGAAGTAATAGACCCAGAGCTGCTTTCAGTCACCAAAGGAACTGATGAAGCCGAAGCTGAAGAGGTTAATGAGATGGTGAGGTACCTAGACATAACAATGCAGTGCGTGGAAGACTTCCCCTCCAAGAGGCCTAATATGTTGCAGGCGGTAGCCATGTTGAGGGAGCTGATACCTGGATCTTCCAATGCAAGCAATAGTGGTTGA 3405 0.462 MESNPFQLFFHRVLKLLLLLCALVSGIELRGVSGSTKTDGEALLAFKKMVHKDPHGVLEGWQANKSPCTWYGVSCSLGRVTQLDLNGSKLEGTLSFYPLASLDMLSVLSLSGNLFYVNSTGLLQLPVGLTQLDLSSAGLVGLVPENLFSKLPNLVSATLALNNLTGSLPDDLLLNSDKLQVLDLSYNNLTGSISGLKIENSCTSLVVLDLSGNNLMDSLPSSISNCTSLNTLNLSYNNLTGEIPPSFGGLKNLQRLDLSRNRLTGWMPSELGNTCGSLQEIDLSNNNITGLIPASFSSCSWLRLLNLANNNISGPFPDSILQSLASLETLLLSYNNISGAFPASISSCQNLKVVDFSSNKLSGFIPPDICPGAASLEELRIPDNLISGEIPAELSQCSRLKTIDFSLNYLKGPIPPQIGRLENLEQLIAWFNALDGEIPPELGKCRNLKDLILNNNNLGGKIPSELFNCGNLEWISLTSNGLTGQIPPEFGLLSRLAVLQLGNNSLSGQIPRELANCSSLVWLDLNSNRLTGEIPPRLGRQLGAKSLSGILSGNTLAFVRNLGNSCKGVGGLLEFAGIRPERLLQIPTLKTCDFTRMYSGAVLSLFTKYQTLEYLDLSYNELRGKIPDEIGGMVALQVLELSHNQLSGEIPSSLGQLRNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGQIPTRGQLSTLPASQYANNPGLCGVPLPECQNDDNQPVTVIDNTAGKGGKRPATASWANSIVLGVLISIASICILIVWAIAMRARRKEAEEVKMLNSLQACHAATTWKIDKEKEPLSINVATFQRQLRKLRFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEFMEYGSLEEMLHGKAKARDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVKEGKGMEVIDPELLSVTKGTDEAEAEEVNEMVRYLDITMQCVEDFPSKRPNMLQAVAMLRELIPGSSNASNSG* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0624 1134 SUPERFAMILY Protein kinase-like (PK-like) 819 1120 IPR011009 -
Vvi1g0624 1134 Gene3D - 551 607 - -
Vvi1g0624 1134 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vvi1g0624 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 962 974 IPR008271 GO:0004672|GO:0006468
Vvi1g0624 1134 SUPERFAMILY L domain-like 275 715 - -
Vvi1g0624 1134 ProSiteProfiles Protein kinase domain profile. 838 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0624 1134 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515
Vvi1g0624 1134 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 198 292 - -
Vvi1g0624 1134 SUPERFAMILY L domain-like 66 367 - -
Vvi1g0624 1134 SMART LRR_typ_2 275 298 IPR003591 -
Vvi1g0624 1134 SMART LRR_typ_2 250 273 IPR003591 -
Vvi1g0624 1134 SMART LRR_typ_2 633 657 IPR003591 -
Vvi1g0624 1134 SMART LRR_typ_2 446 469 IPR003591 -
Vvi1g0624 1134 SMART LRR_typ_2 202 226 IPR003591 -
Vvi1g0624 1134 SMART LRR_typ_2 421 445 IPR003591 -
Vvi1g0624 1134 SMART LRR_typ_2 324 348 IPR003591 -
Vvi1g0624 1134 SMART LRR_typ_2 493 517 IPR003591 -
Vvi1g0624 1134 SMART LRR_typ_2 227 249 IPR003591 -
Vvi1g0624 1134 SMART LRR_typ_2 102 125 IPR003591 -
Vvi1g0624 1134 SMART LRR_typ_2 518 541 IPR003591 -
Vvi1g0624 1134 Pfam Protein kinase domain 841 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0624 1134 CDD STKc_IRAK 844 1123 - -
Vvi1g0624 1134 Pfam Leucine rich repeat 605 646 IPR001611 GO:0005515
Vvi1g0624 1134 Pfam Leucine rich repeat 204 263 IPR001611 GO:0005515
Vvi1g0624 1134 Pfam Leucine rich repeat 277 337 IPR001611 GO:0005515
Vvi1g0624 1134 Pfam Leucine rich repeat 471 530 IPR001611 GO:0005515
Vvi1g0624 1134 FunFam Leucine-rich repeat receptor-like protein kinase TDR 296 562 - -
Vvi1g0624 1134 ProSitePatterns Protein kinases ATP-binding region signature. 844 867 IPR017441 GO:0005524
Vvi1g0624 1134 PRINTS Leucine-rich repeat signature 250 263 - -
Vvi1g0624 1134 PRINTS Leucine-rich repeat signature 179 192 - -
Vvi1g0624 1134 ProSiteProfiles Leucine-rich repeat profile. 277 298 IPR001611 GO:0005515
Vvi1g0624 1134 Gene3D Transferase(Phosphotransferase) domain 1 914 1132 - -
Vvi1g0624 1134 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 408 1122 - -
Vvi1g0624 1134 Gene3D Phosphorylase Kinase; domain 1 798 913 - -
Vvi1g0624 1134 SMART serkin_6 838 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0624 1134 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 573 730 - -
Vvi1g0624 1134 Gene3D Ribonuclease Inhibitor 84 726 IPR032675 -
Vvi1g0624 1134 Pfam Brassinosteroid receptor island domain 548 606 IPR045381 -
Vvi1g0624 1134 FunFam serine/threonine-protein kinase BRI1-like 2 38 149 - -
Vvi1g0624 1134 FunFam serine/threonine-protein kinase BRI1-like 2 799 913 - -
Vvi1g0624 1134 FunFam serine/threonine-protein kinase BRI1-like 2 914 1131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0624 Vvi-Chr1 6227256 6230660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0624 16 1123 Receptor kinase-like Gene Family AT1G55610 49.870 0.0 1034
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vvi1g0624 Pkinase 1.3e-43 CL0016