Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0622 ATGTTGGAAAACACTGCTGCTGCCTCCACTGCCCCATCTTCTTCTTCCGATGCATTTACTTCCTTAGAGAATGGTGTTTGTAATAAAAGGAAAAGGAGACCGGCTGGGACTCCAGATCCAGATGCGGAGGTTGTGTCTCTCTCCCCCAAGACCTTACTGGAATCGGACCGGTATGTGTGTGAGATCTGCAACCAAGGGTTTCAGAGAGACCAGAACCTTCAGATGCACCGGCGACGGCACAAGGTGCCCTGGAAATTGTTGAAGAGGGAGACACAGGAGGTTAAGAAGCGGGTGTTCGTGTGCCCGGAGCCTAGCTGCTTGCACCATGACCCCTTACACGCTCTTGGCGATCTGGTCGGCATCAAAAAACATTTCAGACGGAAGCACAGCAATCACAAACAGTGGGTCTGTGAGAAGTGCTCCAAAGGCTATGCTGTTCAATCTGATTACAAGGCGCACCTCAAGACCTGTGGTACCAGAGGCCACTCCTGCGACTGCGGCCGTGTTTTTTCCAGAGTAGAGAGTTTCATCGAGCACCAAGACGCTTGCGCTGTCCGACAAGTCCGGCCTGAATTACAAACATTGCAGCCGGCCTGCTCGTCTAGAACGGCTTCGAGCACCAGCCCCTCCAGCGATAACAATTTCAGTAGAGTCCAGTTGCCAGGACTCACACTGCCAAAACCAGCTGAAACCGTCTTCTTATGCTTGGAGCGGAATAATCCTTCTCCTTCTGATCTGCAGCACAATCTTGAGCTTCGGCTCCTACCATCCCCGAACACGTACTCCTCGCGAAATTCAGATGAGAATCATGCCACTCATTTGAAGCTCTCTATCGGGTCATGCAACAGCGGCGAGATGAATGAACCCAGATGCGCCAGCGGTGATGCAAGTAGGAGCTCTCCAAGGGAAATGAATACTGCAGAACCAGCATTGGCGGCGTCAAGGTTGAAGGAACTGGCTAGTGAGCAGCTAAAGTTGGCTATGGCCGAAAAGGCCTCTGCTGAAGAGGCCAGACGAGAAGCAAAGCGGCAAATTGAATTAGCGGAGCTGGAGTTTGCCAATGCGAGGAGAATCAGGCAACAGGCACAAGCCGAACTGGAAAAGGCCCAGATTTTGAAAGAGCAGGCTATAAAGAAAGTGAGCTCCACCATTCTGCAAATCACTTGTCATGCTTGCAAGCACCAGTTCCAAGCAACAGCAGCCGGAGCACCGTCGGATGAGACTTCACTGGCTATGAGTTACATGTCTTCAGCCCTAACAGAAGGGGAAGGAGAGTAA 1278 0.5172 MLENTAAASTAPSSSSDAFTSLENGVCNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVFVCPEPSCLHHDPLHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACAVRQVRPELQTLQPACSSRTASSTSPSSDNNFSRVQLPGLTLPKPAETVFLCLERNNPSPSDLQHNLELRLLPSPNTYSSRNSDENHATHLKLSIGSCNSGEMNEPRCASGDASRSSPREMNTAEPALAASRLKELASEQLKLAMAEKASAEEARREAKRQIELAELEFANARRIRQQAQAELEKAQILKEQAIKKVSSTILQITCHACKHQFQATAAGAPSDETSLAMSYMSSALTEGEGE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0622 425 MobiDBLite consensus disorder prediction 196 221 - -
Vvi1g0622 425 MobiDBLite consensus disorder prediction 280 305 - -
Vvi1g0622 425 Gene3D Classic Zinc Finger 120 197 - -
Vvi1g0622 425 SMART c2h2final6 135 162 IPR013087 -
Vvi1g0622 425 SMART c2h2final6 58 80 IPR013087 -
Vvi1g0622 425 SMART c2h2final6 99 129 IPR013087 -
Vvi1g0622 425 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vvi1g0622 425 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Vvi1g0622 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vvi1g0622 425 Gene3D Classic Zinc Finger 36 101 - -
Vvi1g0622 425 FunFam protein indeterminate-domain 12-like 37 105 - -
Vvi1g0622 425 MobiDBLite consensus disorder prediction 1 45 - -
Vvi1g0622 425 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g0622 425 MobiDBLite consensus disorder prediction 196 220 - -
Vvi1g0622 425 Coils Coil 317 379 - -
Vvi1g0622 425 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 386 IPR031140 -
Vvi1g0622 425 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0622 Vvi-Chr1 6214797 6217013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0622 23 425 C2H2 Transcription Factor Family AT2G01940 58.080 3.66e-160 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi1g0622 zf-C2H2 0.004 CL0361