Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0621 ATGTCGCAGTTGGACCTAACTGGCTGCAAGAAAAGGAAGAGAGGAGACAGGGTTTTTAGATTCAAGACCTTTGGAGAAAAAGGCTACCCTGCTGAGTTCAAAGGCTCCTTCCGTGAAAATGTGGCGGCCCTCCTTGAATTTGGGCATATAGAGAGTAACATGAGTTGTGGAATGCTATGCTGGTCGTTTCAGCTCGAGCTTCATAGCCACCCTCCTGCCCATATCTTGCTGTTTGTGGTTGAAGAGCCCATTGGAGCATCCACCCACCGTCACTGCAACCACTGCAAATATGTCGGCTGGGGGCACCATATGATATGCAATAGGAAGTATCACTTTGTAGTGCCTTCCAGGGAAACAGAGGCAGTGTTTGGCCATGACAGCAACTATGAAGGGCCTGATTCGAGGAAGGGTGAGAGGAGCATAGTGGGAGTTGAGGGGCATGCGATGCATGGAGTCATTCACTCCAATGGCTTCGGCCATTTGCTGTGTGTGAATGGGCTAGAAATGGGCTCAGACTTGGCTGGGCGACACATCATGGATTTTTGGGACCGTTTGTGCACCAGTCTGAGGGCAAGGAAAGTGAGTATATATGACATTTCACAGAAGAAAGGCATGGATTTGAGGCTACTCCATGGAGTAGCTTACAGTAAGCCCTGGTTTGGTCGCTGGGGATATGGCTTTGGGCGTGGAAGCTTTGGTGTTACTCAACCAATGTACCAGAAGGCCATAGATGCTATACAAGGCATGCCATTGTGCTTACTCATCCATCATCTTGGCAGTTCTAACCATGACATTCCACTCATCTTCTCAAGGTATCAAACATTATCGGATCATTCACTGGTGACAGTTGGCAATCTCTTTCATTTCATGTTAGAGCTTAAATCCCGCCTTCCAAAGGAAACTTGTCTTGATTCATATAATCCAGGAATCTCAGTGGAAACTACTTGTAGATGGTCTCCAAAGCGAGTTGAAATGGCAGCAAGGGTGATTGTTGAAGCATTAAGGAGGGCTGAATTTAGGTGGGTCTCAAGGCAAGAGGTTCGTGATGCTGCTCGGGCCTACATTGGTGACACTGGCTTGCTGGATTTTGTGCTGAAATCCCTGGGAAACCACATAGTTGGGAATTACTTGGTTCGACGCAGCTTAAACCCAGTGACAAAAGTTCTGGAGTATTGCTTAGAAGACATCTCCACTGTATTTCCCAGTGATGAAGGTTTGGCCATGAATGATTCGAAACTGAAGGCTCGCTACAAGATCACGAGGATTCAACTAATGAAAGACATGTTCTACTTGTACAAAAACATCCTAAAAGAGCAAAAGCAGACGGTTGCCACAGGGATATTTAGTACAATACCTGTAGCTGCACGGGTAATTCTTGACACCAAATATCTAATCAAAGAATATTGTGGGGGGCAACCTTCAGAAGTCAAAGTGGGCTTGAAGCTCTATTGTACAGTTGTATCACGAAACAATGATGAGGATGATGATGGAATAGAAAAGGCACTTCCACCATTTGAGTGTATCATCTTCAAAGATAATTCTACCGTCAATGAGCTTAAGCTAGAAGTTGAAAGGAACTTTAGAGAGATTTATTGGGGATTGAGAAGCTTCTGTGTGGAGTCAATAGTGAATTTGAATGCCAAGGGATCAGATTTGGTTTTTGGGCTAGTTGAAGCAGGCAGTGAACTTCTCTTTGAAGGTAATGACAGCAAGGTTGGAATCAACAATGAGGGGATATATGAGAGTGGTCATAATAACTGCACTGTGGATTGTCCTTGTGGAGCTAAAGATGATGATGGTGAACGAATGATATCATGTGATATTTGTGAAGTTTGGCAGCATACACGGTGTGCTCAGATTCCAAATAATGAAGAAATTCCACATATATTTCTCTGCAATCAGTGTGAGCAAGAAATCATACTATTTCCTTCTCTACCATAG 1941 0.4441 MSQLDLTGCKKRKRGDRVFRFKTFGEKGYPAEFKGSFRENVAALLEFGHIESNMSCGMLCWSFQLELHSHPPAHILLFVVEEPIGASTHRHCNHCKYVGWGHHMICNRKYHFVVPSRETEAVFGHDSNYEGPDSRKGERSIVGVEGHAMHGVIHSNGFGHLLCVNGLEMGSDLAGRHIMDFWDRLCTSLRARKVSIYDISQKKGMDLRLLHGVAYSKPWFGRWGYGFGRGSFGVTQPMYQKAIDAIQGMPLCLLIHHLGSSNHDIPLIFSRYQTLSDHSLVTVGNLFHFMLELKSRLPKETCLDSYNPGISVETTCRWSPKRVEMAARVIVEALRRAEFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISTVFPSDEGLAMNDSKLKARYKITRIQLMKDMFYLYKNILKEQKQTVATGIFSTIPVAARVILDTKYLIKEYCGGQPSEVKVGLKLYCTVVSRNNDEDDDGIEKALPPFECIIFKDNSTVNELKLEVERNFREIYWGLRSFCVESIVNLNAKGSDLVFGLVEAGSELLFEGNDSKVGINNEGIYESGHNNCTVDCPCGAKDDDGERMISCDICEVWQHTRCAQIPNNEEIPHIFLCNQCEQEIILFPSLP* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0621 646 SUPERFAMILY FYVE/PHD zinc finger 583 638 IPR011011 -
Vvi1g0621 646 ProSitePatterns Zinc finger PHD-type signature. 591 635 IPR019786 -
Vvi1g0621 646 CDD PHD_MMD1_like 590 635 - -
Vvi1g0621 646 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 639 - -
Vvi1g0621 646 Pfam PHD-finger 591 637 IPR019787 -
Vvi1g0621 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 576 639 IPR013083 -
Vvi1g0621 646 SMART PHD_3 590 636 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0621 Vvi-Chr1 6187968 6190575 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0621 10 646 PHD Transcription Factor Family AT5G22260 51.657 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi1g0621 PHD 2e-08 CL0390