Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0530 ATGAAAACACACACCCTTCTCTTCAACGTCGCTCTCCTCTCAGCGGCGTTACTCTTCGCTGCCGCCGCCGCCACCCCCACCACATACCCCGACAACTCCAAAGCTGTCGATTTCATCCGTACAAGCTGCAACGCAACTTTGTATCCAAAGCTCTGTTACACCTCCCTCTCCGCCTATGCCAACACCATCCAACAAAGCCCCGCCCACCTGGCCCGCGTCGCAGTTGCTATCAGCCTCTCCAGGGCCCGCCACATGGCCTCCTACGTGGCCAACCTCTCCCGCCAGGCGGACTACGGCTCAGCGCCGCGAACCGCAGCTGCCCTTCATGATTGCTTCTCCACCTTCGGCGACGCCATCGACCAGATTCGCGGCTCTCTCAAGCAGATGCGGCAGCTGAAAGCCGGTGAATCGTTTAGGTTTCAGATGGGTAACGTGCAGACGTGGATGAGCGCCGCGCTTACCAACGAGGATACGTGCACCGATGGATTCGAAGACGCGCCTGACGGCGCCGTGAAATCGGAAGTATGCGATCGGGTTGAGAATGTGAAGAAGTTCACCAGCAATGCGCTTGCCCTGGTTAATAGTTATGTGAACAAGGAAACTAACGCTATGGAAACGCCTTGA 624 0.5737 MKTHTLLFNVALLSAALLFAAAAATPTTYPDNSKAVDFIRTSCNATLYPKLCYTSLSAYANTIQQSPAHLARVAVAISLSRARHMASYVANLSRQADYGSAPRTAAALHDCFSTFGDAIDQIRGSLKQMRQLKAGESFRFQMGNVQTWMSAALTNEDTCTDGFEDAPDGAVKSEVCDRVENVKKFTSNALALVNSYVNKETNAMETP* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0530 207 SMART PMEI_2 34 192 IPR006501 GO:0004857
Vvi1g0530 207 Pfam Plant invertase/pectin methylesterase inhibitor 37 192 IPR006501 GO:0004857
Vvi1g0530 207 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 196 IPR035513 -
Vvi1g0530 207 CDD PMEI-like_3 41 196 - -
Vvi1g0530 207 NCBIfam pectinesterase inhibitor domain 10 196 IPR006501 GO:0004857
Vvi1g0530 207 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 196 IPR035513 -
Vvi1g0530 207 PANTHER PECTINESTERASE INHIBITOR-LIKE 10 192 - -
Vvi1g0530 207 FunFam Pectin methylesterase inhibitor 1 34 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0530 Vvi-Chr1 5061435 5062058 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0530 20 205 Carbohydrate Esterase AT3G14310 27.273 2.78e-19 83.6