Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0529 | ATGATACTCTTGCAGTCTCCTTCCAGATTTCTTCTGCAAACCTTGTTAAATCGGGTTCAGAATCTTGAGAAAGGAGTTGAACTGGATTACCAATGGGTTGAGTTTGATGATGTTCGCTACCATGTTCAGGTGTCAATGAAGTATCCACAATTCCTGCTGCTGTCAGTATCGTTACCCACTCCAGCTCAAGAGGCAGTTTTCTCTGGTGGGCTTCCCTTTGGAGCCATAGAAGCAATAAAAGCTTCATATGGTGTACTCGTACAAATTCTTGATCCTCCAAAAGACGGCTTCAATCTCACATTGAAACTGAATTTGTCAAAACTTCCTCCAGATGAAGAGTATAAACATGCTCTCTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTACTGGGTGCCCCACTAAGGGTAGTGCTAAAACATCTTGCTTCAAGGACTGTTGCTCCAGATATCAATCGGCCTTTTGCCCTTGTACATCGGCCGAAGGAGTCCTTTTTTCTTGTTCCTCAGGCTGAAAAGGTTACTGTTGTGTTTCCTATGAGATTCAAGGACTCCATAGATACTGTTCTTGCAACATCCTTCCTTCAGGAATTTGTTGAAGCAAGACGCACAGCTGGACTGAATAATGCTCCTCCTTGTCTGTGGTCTCCATCTCCTCCTCTAGAATTGAGGGGTACTGCTGGTGAAGCTTTATCTGCAAATGCAGGATTCGTTACTTTTGTCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGAGTTTATCAACATTTCGTGCATATGTTAGTTATCATGTTAAGTGCTCAGAGGGTTTCATGCACACTCGGATGAGACGTCGCGTGGAGTCCCTTATTCAGGCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAG | 987 | 0.4407 | MILLQSPSRFLLQTLLNRVQNLEKGVELDYQWVEFDDVRYHVQVSMKYPQFLLLSVSLPTPAQEAVFSGGLPFGAIEAIKASYGVLVQILDPPKDGFNLTLKLNLSKLPPDEEYKHALLVKIASVREVVLGAPLRVVLKHLASRTVAPDINRPFALVHRPKESFFLVPQAEKVTVVFPMRFKDSIDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSPPLELRGTAGEALSANAGFVTFVIFPRHVEGKKLDRTVWSLSTFRAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDLEKSKKTVQGRSFKRLSLKEAHTNSNSQRWS* | 329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0529 | 328 | Pfam | Arp2/3 complex, 34 kD subunit p34-Arc | 73 | 297 | IPR007188 | GO:0005885|GO:0015629|GO:0034314 | |
| Vvi1g0529 | 328 | Gene3D | - | 139 | 313 | IPR034666 | GO:0005885|GO:0015629|GO:0030041|GO:0034314 | |
| Vvi1g0529 | 328 | MobiDBLite | consensus disorder prediction | 298 | 315 | - | - | |
| Vvi1g0529 | 328 | PANTHER | ARP2/3 COMPLEX 34 KDA SUBUNIT | 1 | 312 | IPR007188 | GO:0005885|GO:0015629|GO:0034314 | |
| Vvi1g0529 | 328 | SUPERFAMILY | Arp2/3 complex subunits | 135 | 297 | IPR034666 | GO:0005885|GO:0015629|GO:0030041|GO:0034314 | |
| Vvi1g0529 | 328 | FunFam | Arp2/3 complex 34 kDa subunit | 1 | 138 | - | - | |
| Vvi1g0529 | 328 | SUPERFAMILY | Arp2/3 complex subunits | 1 | 129 | IPR034666 | GO:0005885|GO:0015629|GO:0030041|GO:0034314 | |
| Vvi1g0529 | 328 | FunFam | Arp2/3 complex 34 kDa subunit | 139 | 313 | - | - | |
| Vvi1g0529 | 328 | MobiDBLite | consensus disorder prediction | 298 | 328 | - | - | |
| Vvi1g0529 | 328 | Gene3D | - | 1 | 138 | IPR034666 | GO:0005885|GO:0015629|GO:0030041|GO:0034314 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0529 | Vvi-Chr1 | 5031140 | 5056751 | Dispersed |