Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0528 ATGAAAAGCCACACCTCTCTCTTCCGCCTCTCTCTCCTCTCAGCGGCGTTAGCGTCACTCTTCGCTGCCGGTGCCGGTGCTGCTACCGCCACCCCCACCACATACTCCGACAACTCCAAAGCTATCGATTTCATCCGTACAAGCTGCAACGCAACTTTGTATCCAGAACTCTGTTACACCTCCCTCTCCGCCTATGCCAAGAGCATCCAACAAAGCGCCGCCCACCTGGCCCGCATCGCAGTTGCTATCAGCCTCTCCACGGCCAGCCACATGGCCTCCTACGTGGCCAAACTCTCCCGCCAGGCAGACTACGGCGCAGCGCCGCTAACCGCCGTCGCCCTTCATGATTGCTTCTCCACCTTCGACGACGCCATCGACCAGATTCGCGGCTCTCTCAAGCAGCTGAAGCAGATGAAGCAGATGAAGGCCAGTGAATCGTTTATGTTTCAGATGGCTAACGTGCAGACGTGGATGAGCGCCGCGCTTACCAACGAGGAGACGTGCACCGATGGATTCGAAGACGTGCCTGACGGCGCCCTGAAATCGGAGGTGTGCGACCGGGCTGCGAACGTGAAGAAGTTCACCAGCAATGCGCTTGCCTTGGTTAATAGTTATGTTAACAAGGAAACTAACCCTACGGAAACGCCTTGA 651 0.5699 MKSHTSLFRLSLLSAALASLFAAGAGAATATPTTYSDNSKAIDFIRTSCNATLYPELCYTSLSAYAKSIQQSAAHLARIAVAISLSTASHMASYVAKLSRQADYGAAPLTAVALHDCFSTFDDAIDQIRGSLKQLKQMKQMKASESFMFQMANVQTWMSAALTNEETCTDGFEDVPDGALKSEVCDRAANVKKFTSNALALVNSYVNKETNPTETP* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0528 216 SMART PMEI_2 40 201 IPR006501 GO:0004857
Vvi1g0528 216 NCBIfam pectinesterase inhibitor domain 29 205 IPR006501 GO:0004857
Vvi1g0528 216 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 205 IPR035513 -
Vvi1g0528 216 PANTHER PECTINESTERASE INHIBITOR-LIKE 15 201 - -
Vvi1g0528 216 Pfam Plant invertase/pectin methylesterase inhibitor 43 201 IPR006501 GO:0004857
Vvi1g0528 216 FunFam Pectin methylesterase inhibitor 1 40 205 - -
Vvi1g0528 216 CDD PMEI-like_3 47 205 - -
Vvi1g0528 216 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 205 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0528 Vvi-Chr1 5025733 5026383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0528 33 204 Carbohydrate Esterase AT1G53830 30.058 1.77e-18 81.6