Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0527 ATGGCTAGACTCTTATTGCATTTTTTGAGTGCTTATTTTGTGGTATTATACGTGAGGGTGGTGGATGGTGCTCCAATATCATCATGCAGTCAGACCCCATATCCTGAAGTATGCAATTATTTCATTGGCAATTACAAGCCCACTGCAGGGATTGATGAAATTCAGTTCCCATTTCGCGACAGGGTCCTTGGAGTCACAATGAACCAAGCCAAGCGACTCCACCTGCTGGTTTCAGCTATGGACTTGAGCTCGTCGGATGAGCGAACCAAGTTGGCTTGGGCTGATTGTTTGGAGCTTTATGAGAACACCATTGACCTGGTGAATCGTTCCATCAACTCTATCAGTCCAGCGGTCATGTTTGACTCTCAAACATGGTTAAGTGCTGCAATTGCCAATCAGCAAACTTGTCTAGACGGATTTATTGATTTCAATCCATCTTCTGATCAGTTTCAATCCTTCCCATCTATGTCAATCTCAACCAGTAACTTCTCAAAGTTGCTTAGCAATTCGCTGGCAATAAACAAGGCAGCAGTTTCCGCAACAAGTATTCTATCTAACAATCAGGCTGGTGGCCGACGCTTGCTTTCTAATGGCTTCCCAACATGGGTTTCAGCTGCTGATAGAAAGCTTCTCCAGTCATCTGGGGCAGCTTCAAGGGCTGATATTGTGGTAGCCCATGACGGGTCCGGTAATTACAAAACCATTTCTGAGGCTGTTGCGGCGTCGGTTAAGCTAAGAAGCGGGACTAAGAGATTTGTTATATACGTGAAAGCGGGTGTTTATAGAGAAAATGTGGAAATCAAGAGGAAAATGAAAAATATCATGATAATCGGAGATGGGAAAGATGCTACCATTGTCACCGGCAATAAGAATGTTCAAGATGGCTCCACAACTTTCCGTTCTGCCACTTTCGCTGTTTCGGGTCATGGCTTCATTGCTCGAGATATGACATTTGAAAACACGGCTGGACCTGAGAAACACCAAGCAGTTGCACTTCGCTCAAGCTCGGATGGTTCGGTTTTCTATGGTTGTAGCTTTAAAGGCTACCAAGACACCTTATATGTGCACACACAACGCCAATTCTACCGCAGCTGCGATGTATATGGAACTGTGGACTTCATCTTTGGAGATGCAGTTGCGGTTCTCCAGAACTGCAACATCTACGTGAGGAGACCCATGAGCAACCAAGCAAACGTCATCACCGCTCAGGGAAGATCCGATCAAAATGAAAATACTGGGATTTCAATCCATAATTCGCGTGTCATGGCAGCTCCGGACTTGAGACCTGTTCAGAGTCGGTTTAAGACGTATCTCGGGCGGCCATGGCGTAAGTACTCAAGGACAGTTTTCATGAAGACTTCTCTAGACGGCTTGATCCATCCTGAGGGGTGGAGTCCATGGAAAGGAGACTTTGGTCTGTCAACTCTGTATTATGGTGAGTATATGAACACAGGAAGCGGTGCAAGTACTCGTGGCAGGGTGAAGTGGCGAGGATATCATGTTATTACTAGCGCAGCGGAGGCCGACAAATTTACAGTTGGCAGATTCTTGGTCGGAGATTCATGGATTCCGACCACTGGAGTTCCCTATGCTTCTGGGTTATGA 1605 0.4604 MARLLLHFLSAYFVVLYVRVVDGAPISSCSQTPYPEVCNYFIGNYKPTAGIDEIQFPFRDRVLGVTMNQAKRLHLLVSAMDLSSSDERTKLAWADCLELYENTIDLVNRSINSISPAVMFDSQTWLSAAIANQQTCLDGFIDFNPSSDQFQSFPSMSISTSNFSKLLSNSLAINKAAVSATSILSNNQAGGRRLLSNGFPTWVSAADRKLLQSSGAASRADIVVAHDGSGNYKTISEAVAASVKLRSGTKRFVIYVKAGVYRENVEIKRKMKNIMIIGDGKDATIVTGNKNVQDGSTTFRSATFAVSGHGFIARDMTFENTAGPEKHQAVALRSSSDGSVFYGCSFKGYQDTLYVHTQRQFYRSCDVYGTVDFIFGDAVAVLQNCNIYVRRPMSNQANVITAQGRSDQNENTGISIHNSRVMAAPDLRPVQSRFKTYLGRPWRKYSRTVFMKTSLDGLIHPEGWSPWKGDFGLSTLYYGEYMNTGSGASTRGRVKWRGYHVITSAAEADKFTVGRFLVGDSWIPTTGVPYASGL* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0527 534 Pfam Pectinesterase 221 520 IPR000070 GO:0030599|GO:0042545
Vvi1g0527 534 ProSitePatterns Pectinesterase signature 1. 248 267 IPR018040 -
Vvi1g0527 534 Gene3D - 215 534 IPR012334 -
Vvi1g0527 534 SMART PMEI_2 20 173 IPR006501 GO:0004857
Vvi1g0527 534 Pfam Plant invertase/pectin methylesterase inhibitor 27 173 IPR006501 GO:0004857
Vvi1g0527 534 FunFam Pectinesterase 215 534 - -
Vvi1g0527 534 NCBIfam pectinesterase inhibitor domain 27 176 IPR006501 GO:0004857
Vvi1g0527 534 SUPERFAMILY Pectin lyase-like 215 533 IPR011050 -
Vvi1g0527 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 176 IPR035513 -
Vvi1g0527 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 175 IPR035513 -
Vvi1g0527 534 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Vvi1g0527 534 CDD PMEI-like_3 27 176 - -
Vvi1g0527 534 FunFam Pectinesterase 26 177 - -
Vvi1g0527 534 PANTHER PECTINESTERASE 17 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0527 Vvi-Chr1 5016013 5018149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0527 26 534 Carbohydrate Esterase AT1G23200 56.391 0.0 557