Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0525 ATGGCCACCGAAGAGCCCAATAACCCTCCCCAACCACCTTCTTCTATTCCCCAGTATTCAGAGATGATTATGGCGGCGATCGAGGCTCTGAACGACAAGGGCGGCTCCAACAAGTCCTCTATCTCCAAGTACATCGAGTCGACGTACGGAGATCTGCCGGCGGCTCACTCCACCCTGCTGGCGCACCACCTCAACAAGATGAAACAGAGCGGCGACCTCGTTATGGTCAAGAACAACTACATGAAGCCCGACCCTAACGCGCCGCCGCGGAGGGGTCGCGGCCGTCCTCCCAAGCCCAAGGTTCCTCTTCCTCCAGGAACCGTTCTCGCGCCGCCGAGGCCCAGGGGCCGTCCGCCAAAGCCCAGAGATCCATTTGCTCCGGTCTCTCCGCCGAAGAAGGCTTCCTCAGGAAGTGGAAAGCCACGCGGACGTCCTCCAAAGAAGCCCAAGGTGGGAACTTCGTCGGCCCCAGCGCCGGCGACTGGGGCACCGAGGCCCAGGGGGCGGCCGCCAAAGGTGAAGCCGGCGGTGGTTCCTGTTGGTTGTTGA 549 0.6211 MATEEPNNPPQPPSSIPQYSEMIMAAIEALNDKGGSNKSSISKYIESTYGDLPAAHSTLLAHHLNKMKQSGDLVMVKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTVLAPPRPRGRPPKPRDPFAPVSPPKKASSGSGKPRGRPPKKPKVGTSSAPAPATGAPRPRGRPPKVKPAVVPVGC* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0525 182 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g0525 182 SMART h15plus2 13 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g0525 182 Gene3D - 13 89 IPR036388 -
Vvi1g0525 182 PRINTS High mobility group protein (HMGY) signature 103 114 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vvi1g0525 182 PRINTS High mobility group protein (HMGY) signature 128 147 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vvi1g0525 182 PRINTS High mobility group protein (HMGY) signature 88 100 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vvi1g0525 182 PRINTS High mobility group protein (HMGY) signature 114 125 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vvi1g0525 182 PANTHER HISTONE H1 5 176 - -
Vvi1g0525 182 MobiDBLite consensus disorder prediction 73 182 - -
Vvi1g0525 182 Pfam linker histone H1 and H5 family 17 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g0525 182 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Vvi1g0525 182 SMART AT_hook_2 164 176 IPR017956 GO:0003677
Vvi1g0525 182 SMART AT_hook_2 112 124 IPR017956 GO:0003677
Vvi1g0525 182 SMART AT_hook_2 139 151 IPR017956 GO:0003677
Vvi1g0525 182 SUPERFAMILY "Winged helix" DNA-binding domain 10 91 IPR036390 -
Vvi1g0525 182 PRINTS AT-hook-like domain signature 110 121 IPR017956 GO:0003677
Vvi1g0525 182 PRINTS AT-hook-like domain signature 90 100 IPR017956 GO:0003677
Vvi1g0525 182 PRINTS AT-hook-like domain signature 137 147 IPR017956 GO:0003677
Vvi1g0525 182 FunFam HMG-Y-related protein A 12 94 - -
Vvi1g0525 182 MobiDBLite consensus disorder prediction 98 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0525 Vvi-Chr1 4981869 4982533 Dispersed