LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0524	ATGAGCGACTCATTAGGCGCAGCCGCATTCATGATGAAACCCAAGAACTTCTTGCAGAATATAATGAAGCCCTTCAAATTCAGTTCCAGCAAAGAGGGACAGAAAGAGGAGGATTTGGAGAAGATCGCCGCCCAGGAACAGAAGCTATTCCCTTTCGAAACCCTAGTCGCAGCCACCAAAAATTTCCACCAGAAGCTCGGTGAAGGAGGTTTCGGTCCCGTCTTCAAGGGGAGGTTGGAGGATGGAAGAGAGATTGCTGTAAAGAAGCTGTCACAGAACTCGAATCAAGGGAAGAAAGAGTTTGAGAATGAGGCCAAGTTGTTGGCTCGTGTACAGCATCGAAATGTTGTAAATCTGTTAGGATATTGTACACGTGGTGCAGAGAAACTTCTTGTCTATGAGTACATCTCCAATGAAAGCCTTGACAAGTTTCTCTTCAAAACAGGTAGACGAGAGGAACTGGATTGGAAACGAAGGTATGACATAGTTGGAGGCATCGCACGGGGCTTGCTTTACCTTCATGAAGACTCCCATAGTTGCATAATCCATCGGGACATCAAGGCCAGCAATGTTCTACTAGATGATAAATGGGCCCCAAAAATTGCCGATTTTGGTATGGCACGTCTCTTTCCAGAAGACCAAACTCATGTCAACACCCGTGTAGCTGGCACCAATGGGTACATGGCTCCTGAGTATGTCATGCACGGACATCTTTCAGTGAAGGCAGACGTATTCAGTTTTGGGGTTTTGATTTTAGAGCTGATCAGTGGTCAGAAGAACTCCACATTTGATGTAAATCTTGATGCACAGAACCTACTTGAGTGGGCATGGAAACTTTACAAGAAAGGCCGAAGCTTGGAGGTTTTGGATCCCTCATTAGCATCATCTGCAGTTGCTGAGCAAGTAGCGATGTGTGTACAGATTGGTCTGCTGTGCACTCAAGCTGATCCACAGTCACGGCCCAACATGCGCCGTGTCGTGGTTATGCTATCAAAGAAACCAGGCACCCTGGAGGAGCCAACTAGACCTGGATACCCAGGTTCAAGATACAGAAGATCTCGTCGGCCTACAACATCAGCCTCCACAGCTGGAACTTCGGGTGAATCTTCACACACATTTGAATCTACCACAAATAGCGCCACTGCAACCACGTCAGGGGTGGCTAGCCCAAGATTAGACTCAAGAGGGAAACGTCCTGTGCAAGGTTAA	1209	0.4731	MSDSLGAAAFMMKPKNFLQNIMKPFKFSSSKEGQKEEDLEKIAAQEQKLFPFETLVAATKNFHQKLGEGGFGPVFKGRLEDGREIAVKKLSQNSNQGKKEFENEAKLLARVQHRNVVNLLGYCTRGAEKLLVYEYISNESLDKFLFKTGRREELDWKRRYDIVGGIARGLLYLHEDSHSCIIHRDIKASNVLLDDKWAPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSVKADVFSFGVLILELISGQKNSTFDVNLDAQNLLEWAWKLYKKGRSLEVLDPSLASSAVAEQVAMCVQIGLLCTQADPQSRPNMRRVVVMLSKKPGTLEEPTRPGYPGSRYRRSRRPTTSASTAGTSGESSHTFESTTNSATATTSGVASPRLDSRGKRPVQG*	403

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0524	402	CDD	STKc_IRAK	66	332	-	-
	Vvi1g0524	402	Pfam	Protein tyrosine and serine/threonine kinase	62	329	IPR001245	GO:0004672\|GO:0006468
	Vvi1g0524	402	FunFam	Cysteine-rich receptor-like protein kinase 10	26	135	-	-
	Vvi1g0524	402	Gene3D	Phosphorylase Kinase; domain 1	24	135	-	-
	Vvi1g0524	402	MobiDBLite	consensus disorder prediction	352	390	-	-
	Vvi1g0524	402	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	33	379	-	-
	Vvi1g0524	402	Gene3D	Transferase(Phosphotransferase) domain 1	136	339	-	-
	Vvi1g0524	402	SUPERFAMILY	Protein kinase-like (PK-like)	47	351	IPR011009	-
	Vvi1g0524	402	MobiDBLite	consensus disorder prediction	330	402	-	-
	Vvi1g0524	402	SMART	serkin_6	60	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0524	402	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	181	193	IPR008271	GO:0004672\|GO:0006468
	Vvi1g0524	402	ProSiteProfiles	Protein kinase domain profile.	60	336	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0524	402	FunFam	Cysteine-rich receptor-like protein kinase 10	137	342	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0524	Vvi-Chr1	4966182	4973713	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0524	40	345	Receptor kinase-like Gene Family	AT4G11530	51.613	2.92e-115	349

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vvi1g0524		PK_Tyr_Ser-Thr	3e-50	CL0016