Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0522 ATGGCCACGCTTCAGACTTGGAGGAAGGCTTATGGTGCTCTCAAGGACTCCACCAAAGTCGGCCTCGCCCACGTTAACAGCGATTTCGCGGATTTGGACGTTGCGGTCGTCAAAGCTACGAATCACGTCGAATGTCCACCCAAGGAGAGGCACATCAGAAAAATTTTGGTCGCCACGTCTGCGATCAGGCCACGAGCCGATGTTGCCTACTGCATTCATGCGCTCTCGAGGCGATTGGCGAAGACGCATAATTGGACGGTGGCGTTAAAGACGCTCATAGTTATCCATAGAGCATTAAGGGAGGGTGATCCTACTTTCCGGGAAGAACTTCTTAATTTCTCACAGAGGGGACGCATTCTCCAACTGTCCAATTTCAAAGATGATTCAAGCCCTATTGCTTGGGATTGCTCTGCCTGGGTACGTACATATGCACTGTTTCTAGAGGAACGACTTGAATGTTTTAGGATTCTGAAGTATGACATCGAGGCTGAGCGCCTCCCCAGACCTGCCCAAGGGCAGGAGAAGGGTTACAGCAGGACCAGGGAATTGGATAGTGAAGAACTATTGGAACAGTTGCCTGCTTTGCAGCAGCTGCTACATCGTCTTATTGGATGCCGGCCGGAGGGAGCTGCTATTGGCAATTATGTGATACAGTATGCACTGGCTTTGGTACTCAAAGAGAGCTTTAAAATTTATTGTGCTATTAATGATGGAATTATCAATCTTGTTGATAAGTTCTTTGAGATGCCCAGACATGAAGCTTTTAAAGCCCTTGAAATCTATAAACGAGCTGGCCAGCAGGCTGGGAGCCTTTCTGATTTCTATGAAGTTTGCAAAGGTTTGGAACTTGCTAGAAATTTCCAGTTTCCTGTTTTGAGAGAGCCTCCACAATCTTTTCTTGCAACCATGGAAGATTATATAAGAGAGGCACCAAGGATGGTTTCTGTTCCAAATGAACCATTGCTTCAATTGACATACAAATCAGAAGATGCTCCTTCTCCTTCTGAAGACACAAAATTACCTAGTGATGATGAACCCAAGCTAGAACCTTCAGAAAATGTTGAAGTCTCCAGTGTCGAGGTTGCTCATCCTCCCCCTCCTCTCCCGCCAAACAACTTGGATGATGGAGATCTACTGGGAATAAATGTTGTTGCTCATGATGCATCTGCAATTGAGGAAAGCAATGCTTTGGCTCTAGCCATAGTTCCATCTGGGTCTGCTGCTGCACCAACATTTGACTCCGGTGCTTTTCAAGCAAAAGACTTTGATCCTACTGGATGGGAGCTTGCCCTGGTGACCACTCCAAGCAGCAATATTTCTTCAGCGAATGAGAGGCAATTGGAGCATACAGAGCTGCCCAGCAGCCTGTTTATGGAGCACCAGCCCCGAATCCATTTGAGGTACATGATCCATTTGCTGTATCTAATGGTGTTGCTGCTCCTCCAGCAGTTCAAATGGCAGCGATGGCTCAACAGCAGCCCAATCCCTTTGCTCCATACCCAACCTACCAGCAGCAGCAACAGCAACAGCAACAGCAACATTTGA 1545 0.4725 MATLQTWRKAYGALKDSTKVGLAHVNSDFADLDVAVVKATNHVECPPKERHIRKILVATSAIRPRADVAYCIHALSRRLAKTHNWTVALKTLIVIHRALREGDPTFREELLNFSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRPAQGQEKGYSRTRELDSEELLEQLPALQQLLHRLIGCRPEGAAIGNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAFKALEIYKRAGQQAGSLSDFYEVCKGLELARNFQFPVLREPPQSFLATMEDYIREAPRMVSVPNEPLLQLTYKSEDAPSPSEDTKLPSDDEPKLEPSENVEVSSVEVAHPPPPLPPNNLDDGDLLGINVVAHDASAIEESNALALAIVPSGSAAAPTFDSGAFQAKDFDPTGWELALVTTPSSNISSANERQLEHTELPSSLFMEHQPRIHLRYMIHLLYLMVLLLLQQFKWQRWLNSSPIPLLHTQPTSSSNSNSNSNI* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0522 514 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Vvi1g0522 514 FunFam Clathrin assembly protein AP180 6 161 - -
Vvi1g0522 514 MobiDBLite consensus disorder prediction 325 367 - -
Vvi1g0522 514 MobiDBLite consensus disorder prediction 332 351 - -
Vvi1g0522 514 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Vvi1g0522 514 Gene3D ANTH domain 173 321 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vvi1g0522 514 SMART enth_2 30 161 IPR013809 -
Vvi1g0522 514 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Vvi1g0522 514 FunFam Putative clathrin assembly protein 173 321 - -
Vvi1g0522 514 Gene3D - 6 161 IPR008942 -
Vvi1g0522 514 CDD ANTH_N 32 154 - -
Vvi1g0522 514 PANTHER CLATHRIN ASSEMBLY PROTEIN 6 455 IPR045192 GO:0048268|GO:0072583
Vvi1g0522 514 SUPERFAMILY GAT-like domain 178 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0522 Vvi-Chr1 4934650 4948657 Dispersed