Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0519 ATGATGGCTTCGACAATACCACCTCATTTCAAGTTTAAGGTTTGGAACAATCATCCACACCCAAACACCCACTTGGATGTTATTGCAGTTAGACCCACAAGAACCCGAAGGAGTCCAACTGCCTCATTCTGTTCTACCCATCAGCATCATCTTCTTCATCATCATATCTTCAACCACAAATCAAGTTCTATCCGTACAGTCCTCACAAGGGTCAGCGGCGATGGTGGAGGTATTGTTGATGCCGCCTCACAACAGTCTGCTTCTGCGGATGGCATGTGCTCTTCCCTCCTGGCTTTACATGGTGATGCATCCTCTCACTTACTGTTGCAGGACAGAAATACAATAAACAGCAGCTCTCCTAGTCTTGGTGATGGTTATGTGGCATTGTTTGTTCGGATGCTTGGGCTAGATAATGATCCTCTTGATAGGGAACAGGCAGTAGTAGCATTGTGGAAATATTCACTTGGAGGAAAGCAGTATATTGATGCCATAATGCAATTCCGAGGCTGCTTAAATCTCACAGTAAATCTCCTTAAATCAGACTCCAGTTCTACTTGTGAAGCAGCTGCAGGCCTTCTACGAGAAATAGCTTCAATTAATCTACACAGAGAGTCAGTAGCAGAAAGTGGGGCAATAGAAGAGATAACTGGTTTGTTGAGGCATTCTTCCTTGACATCTGAGGTGAAGGAGCAAAGTATTTGTACTCTATGGAATCTGTCTGTAGATGAAAAGCTCAGAATGAAAATTGCTAACACTGATCTTCTGCCGCTAGTAATCAGGTCCCTGGAGGATGAGGATATTAAAGTGAAGGAGGCAGCTGGAGGGGTTTTGGCAAATTTGGCATTAAGCACATCTCTTCACAGCATCATGGTTGAAGCAGGTGTTATTCCAAAATTGGCAAAGCTTTTAAGAATTGATGTAGAAGGATCTAAAGTCATTAAAAAGGAAGCAAGAAATGCATTGTTGGAACTTGCTAAGGATGAATATAATAGAATTCTCATCGTTGAGGAGGGTCTGGTCATAGTGCCAATGATTGGTGCAGCTGCCTACAAGGCCTTGACACCAGGTTTGTACTCATGGCCTTCTTTACCTGATGGTACAAAGATCGAACAGAGTTCCAAAGCTCCCTCAAAGTATGGCGCCTCTGAATTACTCCTTGGATTGAATATTGATGACAAGAATGCTGAAATAGATAAAAGCAAGATAAATGCAGTAGTTGGGCGTACACAGCAACAGTTTCTTGCTCGTATTGGGGCTATAGAGGTGGAAGATGAAAGAAAATCCCAATCTGTATCCACAAGTCAGCGGTTTACACTTTTGCCATGGATGGATGGTGTTGCTCGGTTAGTTCTGATTCTTGGGCTTGAAGATGAGTTGGCCATTTCAAGAGCTGCAGAATCAATTGCTGATGCATCTATTAATGAGCATATGCGGATCTCATTCAAGGAAGCTGGAGCCATGAAGCATCTAGTTCGACTTTTAGACCATAATAATGATTCGGTTAGATTTGCTGTAACTTGTGCTTTGGAAAGGTTGTCTGTCAGCAACAGCATCTGCCAGCTAATCGAAGCTGAAGGTGTTATATATCCTTTACTTAATGCTCTGAAGCACTCAGGGACATCTGAAACTTTGATGGAAAAGACTTTGGATATTTTGGCACGGATTTTAGACCCTGGTAAAGAAATGAAATCAAAGTTTTATGAAGGACCAGTTAATGGATCAAAGAAGGGATTGAATGCAATGGGAAGGCCTGATGCCACTATTCAATTTGTTGGAAACATGGACGAGACAGCTGTATCAAAATCAACTACAGGGAAAGATGTCATGGACTCTGCCATCATTGCTTGCCTTGTTGAAATTTTAAAGACTCCATCCCCAAATTTGCAGAGAAAAGCATCTTCCATCCTTGAGTTCCTGACAATTATTGAGCCACACTTGGACACAATCCTTTCAGTAGACATTGAATCTGGTTTGGAAGCTGTTTTCCAACAGAAGATTTTGGACGATACAGAATCTGATATGGGTGATCAGCGGCCAGAACTACATGCCTTGAAAGTCGAAGAAGCCGGTCTCGCTATATCTGCTGCATCACGCTTACTGACAAAATTACTTGACTTTGTGCAGTTTCGCCAAACAATAAATGCTGCACGGTTCACAAAATTGCTACGTAAAACTCTCAGGTCAAATATTCCTCTTCACAACAAAGACTGGGTTGCAGCTTGCCTAGTTAAACTGAGTTCTTTGTCTGGTCCCAACCAAGATTTTGATGATCCAGTCAACCTGGAGGTAACTCTTTATGAGACTGTCCCAAGACTTGTTGAGCAGATCAAAACCTCTTTCTCTCCAGAAGCACAAGAAGCTGCTGTTATAGAACTCAACAGAATAATTTCGGAAGGGGTGGTGGATTCTACTCGTGCAGTTGCTGCTGAGGGAGGAATATTCCCATTAGTGAAGGTGATTGAAGAAGGGAGTGAGAGGGCTGTTGAAGCTGCCTTAGCTATACTGTATAATATAAGCATGGACAGTGAGAACCATTCGGCAATTATAGCTGCTGGAGCAATCCCAGCATTGAGGAGAATTGTTCTTTCACAAGGGCCACAGTGGATGCGAGCGCTTCATTTGCTGAGGACTTTGCCTACATGA 2643 0.4279 MMASTIPPHFKFKVWNNHPHPNTHLDVIAVRPTRTRRSPTASFCSTHQHHLLHHHIFNHKSSSIRTVLTRVSGDGGGIVDAASQQSASADGMCSSLLALHGDASSHLLLQDRNTINSSSPSLGDGYVALFVRMLGLDNDPLDREQAVVALWKYSLGGKQYIDAIMQFRGCLNLTVNLLKSDSSSTCEAAAGLLREIASINLHRESVAESGAIEEITGLLRHSSLTSEVKEQSICTLWNLSVDEKLRMKIANTDLLPLVIRSLEDEDIKVKEAAGGVLANLALSTSLHSIMVEAGVIPKLAKLLRIDVEGSKVIKKEARNALLELAKDEYNRILIVEEGLVIVPMIGAAAYKALTPGLYSWPSLPDGTKIEQSSKAPSKYGASELLLGLNIDDKNAEIDKSKINAVVGRTQQQFLARIGAIEVEDERKSQSVSTSQRFTLLPWMDGVARLVLILGLEDELAISRAAESIADASINEHMRISFKEAGAMKHLVRLLDHNNDSVRFAVTCALERLSVSNSICQLIEAEGVIYPLLNALKHSGTSETLMEKTLDILARILDPGKEMKSKFYEGPVNGSKKGLNAMGRPDATIQFVGNMDETAVSKSTTGKDVMDSAIIACLVEILKTPSPNLQRKASSILEFLTIIEPHLDTILSVDIESGLEAVFQQKILDDTESDMGDQRPELHALKVEEAGLAISAASRLLTKLLDFVQFRQTINAARFTKLLRKTLRSNIPLHNKDWVAACLVKLSSLSGPNQDFDDPVNLEVTLYETVPRLVEQIKTSFSPEAQEAAVIELNRIISEGVVDSTRAVAAEGGIFPLVKVIEEGSERAVEAALAILYNISMDSENHSAIIAAGAIPALRRIVLSQGPQWMRALHLLRTLPT* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0519 880 Pfam Armadillo/beta-catenin-like repeat 481 513 IPR000225 GO:0005515
Vvi1g0519 880 Gene3D - 670 878 IPR011989 -
Vvi1g0519 880 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 485 527 IPR000225 GO:0005515
Vvi1g0519 880 ProSiteProfiles HEAT repeat profile. 254 292 IPR021133 -
Vvi1g0519 880 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 210 254 IPR000225 GO:0005515
Vvi1g0519 880 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 811 853 IPR000225 GO:0005515
Vvi1g0519 880 SMART arm_5 474 514 IPR000225 GO:0005515
Vvi1g0519 880 SMART arm_5 199 241 IPR000225 GO:0005515
Vvi1g0519 880 SMART arm_5 242 282 IPR000225 GO:0005515
Vvi1g0519 880 SMART arm_5 841 880 IPR000225 GO:0005515
Vvi1g0519 880 SMART arm_5 515 557 IPR000225 GO:0005515
Vvi1g0519 880 SMART arm_5 602 641 IPR000225 GO:0005515
Vvi1g0519 880 SMART arm_5 158 198 IPR000225 GO:0005515
Vvi1g0519 880 SMART arm_5 756 797 IPR000225 GO:0005515
Vvi1g0519 880 SMART arm_5 283 326 IPR000225 GO:0005515
Vvi1g0519 880 SMART arm_5 800 840 IPR000225 GO:0005515
Vvi1g0519 880 SUPERFAMILY ARM repeat 692 867 IPR016024 -
Vvi1g0519 880 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 880 - -
Vvi1g0519 880 SUPERFAMILY ARM repeat 127 639 IPR016024 -
Vvi1g0519 880 Gene3D - 442 669 IPR011989 -
Vvi1g0519 880 Gene3D - 108 353 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0519 Vvi-Chr1 4920483 4927776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0519 188 344 U-box Gene Family AT2G28830 32.704 1.36e-08 56.6