Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0515 ATGAAGAGGGAGTATCATCATCCTCATCACCCAACTTGCTCCACGTCCCCCACCGGCAAGGGTAAGATGTGGGATGCCGACCCCCAGCAAGACGCCGGCATGGATGAGCTTCTCGCTGTTTTGGGCTACAACGTCAAGGCCTCCGACATGGCTGAGGTCGCTCAGAAGCTTGAACAGCTTGAGGAAGTTATTGTTAATGCTCAGGAGGATGGCCTCTCTCATCTCGCTTCCGAGACTGTTCATTACAACCCCTCCGATCTGTCTAACTGGCTTGGAAGCATGCTCTCCGAGTTCAACCCCACTCCCAATTGCGCCCTTGACAACCCATTCTTGCCTCCCATCTCCCCTCTTGATTACACCAATTGCAGCACCCAACCAAAACAGGAGCCTTCCATCTTTGACTCCCCGTCTTTGGATTACGATCTCAAAGCAATTCCAGGTAAGGCTCTTTATTCCCATATCGAACAGCCGCCGCAACAGCCACCGGCCCCTCCTCTCTATCAAAGGGATAACAAGCGATTGAAGCCCACGACTTCAGCTACAGCCAACTCGGTTTCCTCTGTTATTGGGGGTTGGGGAGTTCCCACCGAGTCCGCTCGCCCAGTTGTCCTTGTTGACTCGCAAGAGACCGGAATCAGGCTAGTCCACACCCTAATGGCCTGTGCAGAAGCGGTCCAGCAGGAAAATCTGAAGCTGGCTGAAGCACTTGTCAAGCAAATCGGGTTCCTGGCCGTGTCTCAGGCGGGAGCCATGCGGAAGGTAGCCACCTACTTCGCCGAAGGTCTAGCTCGTCGAATCTACCGACTCTATCCTGATAAGCCTCTCGACTCCTCGTTCTCCGATATTCTCCAGATGCACTTCTATGAGACCTGCCCCTACCTCAAATTCGCCCACTTCACCGCCAATCAAGCTATCCTTGAAGCCTTCGAGGGGAAAAAGCGGGTTCACGTCATCGATTTCAGCATGAAACAAGGGATGCAGTGGCCTGCGCTGATGCAAGCCCTAGCCCTCCGTCCCGGCGGGCCGCCCTCGTTCCGTCTAACCGGAATTGGGCCTCCTTCCACGGACAACACCGATCATCTGCATGAAGTGGGTTGGAAATTGGCCCAGCTGGCGGAGACGATTCATGTGGAGTTCGAATACAGAGGTTTCGTGGCCAACAGTTTGGCAGATCTCGACGCATCCATGCTTGAACTGCGAGATGGGGAGTCCGTGGCAGTGAACTCGGTGTTCGAGTTGCATAGTTTGCTGGCTCGCCCTGGGGGTATTGAGAGGGTGCTGTCGGCGGTGAAAGATATGAAACCAGACATAGTGACGATAGTAGAGCAGGAAGCCAACCACAACGGCCCCGTTTTCCTAGACCGGTTCACCGAGTCGCTTCACTACTACTCCACTCTGTTTGACTCATTGGAAGGGTGTGGTGTGTCGCCGGTGAACACCCAGGACAAGCTGATGTCGGAGGTATACTTGGGGCAACAGATCTGTAACGTGGTGGCCTGCGAGGGGCCTGAGCGAGTGGAGCGGCACGAAACGCTGGCTCAGTGGAGAGCCCGGTTGGGATCGGCGGGGTTCGACCCAGTGAACCTAGGGTCCAACGCTTTCAAGCAAGCGAGTATGCTGCTGGCTCTATTCGCGGGTGGGGATGGGTACAGGGTGGAGGAGAACAATGGGTGTCTGATGCTGGGTTGGCACACTCGCCCCCTCATTGCCACCTCCGCCTGGCAACTCGCTAACAAACCTGCCTTGCCCTCCTCCACACCTGCCTCCAACTGA 1773 0.5572 MKREYHHPHHPTCSTSPTGKGKMWDADPQQDAGMDELLAVLGYNVKASDMAEVAQKLEQLEEVIVNAQEDGLSHLASETVHYNPSDLSNWLGSMLSEFNPTPNCALDNPFLPPISPLDYTNCSTQPKQEPSIFDSPSLDYDLKAIPGKALYSHIEQPPQQPPAPPLYQRDNKRLKPTTSATANSVSSVIGGWGVPTESARPVVLVDSQETGIRLVHTLMACAEAVQQENLKLAEALVKQIGFLAVSQAGAMRKVATYFAEGLARRIYRLYPDKPLDSSFSDILQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPSTDNTDHLHEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSLLARPGGIERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLMSEVYLGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLANKPALPSSTPASN* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0515 590 Gene3D - 33 98 IPR038088 -
Vvi1g0515 590 Pfam Transcriptional regulator DELLA protein N terminal 35 102 IPR021914 -
Vvi1g0515 590 ProSiteProfiles GRAS family profile. 205 575 IPR005202 -
Vvi1g0515 590 SMART DELLA_2 35 108 - -
Vvi1g0515 590 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 160 571 IPR005202 -
Vvi1g0515 590 MobiDBLite consensus disorder prediction 153 182 - -
Vvi1g0515 590 MobiDBLite consensus disorder prediction 1 28 - -
Vvi1g0515 590 FunFam DELLA protein GAI 33 98 - -
Vvi1g0515 590 Pfam GRAS domain family 214 575 IPR005202 -
Vvi1g0515 590 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0515 Vvi-Chr1 4895406 4897178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0515 1 577 GRAS Transcription Factor Family AT2G01570 65.789 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi1g0515 GRAS 4.2e-138 CL0063