Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0512 ATGGAGAATTTGTTGGGTCTTCTCAGGCTTCGAGTGCGCAGAGGAATTAATCTAGCTGTTCGCGATGCCCGTAGCAGCGATCCTTATGTTGCCGTCACCATGGGTGAACAGAAATTGAAGACCCGCGTGGTTAAAGACAATTGCAATCCTGAGTGGAACGAGGAATTGACTCTCTCTATTGCCGACACCGACGTTCCAATCAATCTAGTAGTGTATGACAGCGACACATTCACCTTAGACGACAAAATGGGGGACGCAGAGATAGACATCAAACCATATGTGGAGTGCCTGAAAATGGGCCTGGAAAACCTTCCCACTGGGACGGTTATCTCCAGAGTTCAGCCGAGCCGGACGAACTGCCTAGCTGATGAGAGCTGCTGTGTTTGGGACAATGGAAAAATCCGGCAAGACATGCTTCTCAGGCTGAGAAATGTAGAATGTGGGGAGGTAGAGGTCCAAATTGAATGGATTAATATTCCAGGCTGCAGGGGACTGTTTTGA 501 0.487 MENLLGLLRLRVRRGINLAVRDARSSDPYVAVTMGEQKLKTRVVKDNCNPEWNEELTLSIADTDVPINLVVYDSDTFTLDDKMGDAEIDIKPYVECLKMGLENLPTGTVISRVQPSRTNCLADESCCVWDNGKIRQDMLLRLRNVECGEVEVQIEWINIPGCRGLF* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0512 166 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 162 IPR044562 -
Vvi1g0512 166 Pfam C2 domain 7 92 IPR000008 -
Vvi1g0512 166 SMART C2_3c 7 102 IPR000008 -
Vvi1g0512 166 Gene3D C2 domain 3 161 IPR035892 -
Vvi1g0512 166 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Vvi1g0512 166 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 114 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0512 Vvi-Chr1 4866990 4868127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0512 38 165 C2H2 Transcription Factor Family AT1G70790 60.769 1.02e-55 170